4dn-dcic pairix issues - Githubissues

4dn-dcic / pairix

1D/2D indexing and querying on bgzipped text file with a pair of genomic coordinates

MIT License

86 stars 14 forks source link

issues

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Fix various incompatible pointer types.

#78 emollier opened 1 month ago
0
Isoc99

#77 SooLee closed 8 months ago
2
Is there a tool to convert bam file to juicer's merged_nodups.txt file?

#75 xiekunwhy opened 1 year ago
0
Cannot install on Mac M2

#74 evo-eco-gen opened 1 year ago
3
[ti_index_core] the indexes overlap or are out of bounds

#73 molecule53 opened 1 year ago
7
Problem with fragment_4dnpairs.pl

#72 zzh24zzh closed 2 years ago
0
Avoid a Python 3.10 regression in iterating GzipFiles

#71 stefanor opened 2 years ago
0
Which coordinates does pairix return?

#70 gdolsten opened 3 years ago
3
pypairix to capture pairs that have specific readIDs

#69 LIZW2019 opened 3 years ago
0
Fix typo

#68 nathancfox closed 3 years ago
1
Converting pairs to merged_nodups

#67 papelypluma closed 3 years ago
2
max chrom size too small

#66 dmalzl opened 3 years ago
8
free BGZF

#65 lldelisle opened 3 years ago
0
Support for python3.8

#64 lldelisle closed 3 years ago
4
Strand fields in pairs file format

#63 oriolfornes closed 4 years ago
1
Dev 1

#62 SooLee opened 4 years ago
0
pypairix linecount no longer reverting to int

#61 SooLee closed 5 years ago
1
Is there a binary spec for the pairix format?

#60 cmdcolin closed 4 years ago
7
Fetching small regions can be very slow

#59 mimakaev closed 5 years ago
4
Integer overflow for -n option: reporting negative numbers!

#58 mimakaev closed 5 years ago
6
0.3.6

#57 SooLee closed 6 years ago
0
Two questions about the pairs format

#56 lh3 closed 6 years ago
2
0.3.5

#55 SooLee closed 6 years ago
0
29

#54 SooLee closed 6 years ago
0
Add a Codacy badge to README.md

#53 codacy-badger closed 6 years ago
0
0.3.3

#52 carlvitzthum closed 6 years ago
0
executing get_blocknames() twices crashes Python

#51 golobor closed 6 years ago
3
pypairix check triangle

#50 SooLee closed 6 years ago
0
updated valgrind test for travis

#49 SooLee closed 6 years ago
0
0.3.1

#48 carlvitzthum closed 6 years ago
0
0.3.0

#47 SooLee closed 7 years ago
0
0.2.9

#46 SooLee closed 7 years ago
0
fix extra spaces from some versions of wc

#45 burakalver closed 7 years ago
0
Hotfix

#44 carlvitzthum closed 7 years ago
0
autoflip, print-region-split-character, added run-merge-pairs

#43 SooLee closed 7 years ago
0
V0.2.6

#42 SooLee closed 7 years ago
0
assume symmetrical query

#41 blajoie closed 6 years ago
1
quick proofread of README.md

#40 scottkall closed 7 years ago
1
Error indexing a custom contact text file

#39 RXCoux closed 7 years ago
2
0.2.5

#38 SooLee closed 7 years ago
0
V0.2.4

#37 SooLee closed 7 years ago
0
haha

#36 SooLee closed 7 years ago
0
V0.2.3

#35 SooLee closed 7 years ago
0
V0.2.2

#34 SooLee closed 7 years ago
0
V0.2.1

#33 SooLee closed 7 years ago
0
V0.2.0

#32 SooLee closed 7 years ago
0
V0.1.9

#31 SooLee closed 7 years ago
0
V0.1.8

#30 SooLee closed 7 years ago
0
V0.1.7

#29 SooLee closed 7 years ago
0
V0.1.6

#28 SooLee closed 7 years ago
0