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### Ask away!
Hi, I'm wondering have you tested the new reference release by 10x. "https://cf.10xgenomics.com/supp/cell-exp/refdata-gex-GRCh38-2024-A.tar.gz" Thanks! Hsiao-Lin
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hello,
when importing cloupe file to Loupe Brower8.0 , i got a different plot comparing with dimplot(). In Loupe Brower, when seting "split view", it would get a very scattered plot.
use FindInteg…
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Bonjour. This is my first time running sopa. I found both sopa-v1.0.14 and v1.0.13 errors on Xenium v2 pipeline data that includes multimodal cell segmentation stains but not on v2 pipeline data that …
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Hey, just like many other tools, I'm trying to run PROST and it gives a memory error (actually, it simply kills the terminal) using Visium HD data (600k bins/spots)
Dataset can be found here https:…
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### Description of feature
https://www.10xgenomics.com/support/software/xenium-ranger/latest
**!! Please check with nf-core and 10x how to implement this as a module to avoid copy right and mainte…
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### Description of feature
# Description
https://qupath.github.io/
https://www.10xgenomics.com/support/software/xenium-explorer/latest/tutorials/xe-image-file-conversion
Can we implement this?
heylf updated
1 month ago
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I'm following the "[read the docks](https://cumulus.readthedocs.io/en/stable/cellranger/fixed_rna_profiling.html)" input protocol for the CSV file and other Terra inputs and am receiving an error rela…
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This txt file link is already 404: Not Found.
wget -qO- https://raw.githubusercontent.com/10XGenomics/cellranger/master/lib/python/cellranger/barcodes/3M-february-2018.txt.gz | gunzip - > 3M-februa…
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Hi, I got following error message:
`02:20:12 [WARN] Variant at chr7:148807387 has invalid alternative characters. This record will be ignored.`
My vcf file contains following lines:
```
chr7…
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Hi @hxj5 , I have a question regarding 10X 5' scRNA-seq data.
For 5' sequencing, the read containing cell barcode and UMI contains part of the transcript https://kb.10xgenomics.com/hc/en-us/article…