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## Problem Summary
Several values in HuBMAP metadata require consolidation or mapping updates to align with the current standards. The issue affects two categories:
- **Granularity Mismatch Mapp…
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Application: Cell Ranger ARC
Link: https://www.10xgenomics.com/support/software/cell-ranger-arc/latest
Cluster: Myriad
Description: Cell Ranger ARC is an advanced analytical suite designed f…
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Is there a capture rate you recommend using for GemX chemistries? (https://www.10xgenomics.com/support/single-cell-gene-expression/documentation/steps/library-prep/chromium-gem-x-single-cell-3-reagent…
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Hi!
I was trying to run the pipeline using a SMB-mounted directory in a network cluster, but I got an error at the beginning regarding symbolic links:
"Command error:
ln: failed to create sym…
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This txt file link is already 404: Not Found.
wget -qO- https://raw.githubusercontent.com/10XGenomics/cellranger/master/lib/python/cellranger/barcodes/3M-february-2018.txt.gz | gunzip - > 3M-februa…
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Release v9
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Wrong URL, the correct should point to the dataset mentioned here:
`https://cf.10xgenomics.com/samples/xenium/2.0.0/Xenium_V1_humanLung_Cancer_FFPE/Xenium_V1_humanLung_Cancer_FFPE_he_image.ome.tif`
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Thank you very much for `bin2cell`.
@ktpolanski is `b2c.view_labels()` in 0.3.2 the unformalized custom function @nadavyayon referred to and was using at 18 minutes and 35 seconds (18:35) in the Se…
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# Changelog
## X (Matrix Layers)
- Updated Visium Spatial Gene Expression table row to **Descendants** of Visium Spatial Gene Expression
- Added matrix requirements for Visium CytAssist Spatial…
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### What is the documentation improvement or update you wish to see?
Many previous single-cell analyses use gene symbols as their primary identifiers, while we use the more stable Ensembl IDs. We s…