issues
search
epi2me-labs
/
wf-single-cell
Other
69
stars
36
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
umi_gene_saturation error 137
#142
lizh0205
opened
3 days ago
2
TSO artefacts
#141
remiolsen
opened
1 week ago
0
Only unknown transcripts
#140
HenriettaHolze
opened
2 weeks ago
3
Recover unmapped reads
#139
HenriettaHolze
closed
1 week ago
1
Visium v1 Spatial analysis
#138
MustafaElshani
opened
1 month ago
3
Requesting detailed information about each read
#137
sagnikbanerjee15
opened
1 month ago
1
Questions about the Barcode/UMI correction
#136
Francais0620
opened
1 month ago
2
How is collapsing of the corrected UMIs for transcript quantification done?
#135
skudashev
closed
1 month ago
2
Return the unfiltered matrix
#134
ddiez
opened
1 month ago
6
GEM-X compatibility
#133
ECRWatson
closed
2 weeks ago
2
How to use custom parameters for barcode and UMI length?
#132
MenglinC
closed
1 month ago
5
wf-single-cell HTML report shows incorrect number of the Input reads
#131
jackchenx3
closed
1 month ago
2
Failed to pull singularity image | status : 255
#130
MenglinC
closed
1 month ago
1
Failed to pull singularity image | status : 255
#129
Francais0620
closed
1 month ago
2
I can't find a summary file for the pipeline
#128
jackchenx3
closed
1 month ago
2
Reads without adaptor/primer won't be used, so duplex reads will not be used in wf-single-cell?
#127
ErminZ
opened
2 months ago
2
Combining short and long reads with StringTie --mix
#126
Jason-Eigenbrood
opened
2 months ago
1
`pipeline:process_bams:stringtie (1)` terminated with an error exit status (1)
#125
sme229
opened
2 months ago
8
NUMBA RuntimeError related to cachedir
#124
CloXD
closed
2 months ago
2
ValueError: The expression matrix contains no cells
#123
sme229
closed
2 months ago
3
support 3primeV4 chemistry
#122
yinshiyi
closed
2 months ago
1
RuntimeError: cannot cache function 'rdist': no locator available
#121
sme229
closed
2 months ago
2
3prime v4 support
#120
Lisa-We
closed
2 weeks ago
2
processes got stuck on large input
#119
wanghlv
closed
2 months ago
4
the new reference release by 10x
#118
wanghlv
closed
2 months ago
2
adapters and barcode/UMI trimmed reads
#117
wanghlv
closed
2 months ago
2
5prime v3
#116
xianliaogithub
opened
3 months ago
3
Time directives for all processes
#115
WardDeb
closed
3 months ago
2
OSError: [Errno 28] No space left on device
#114
lscdanson
closed
2 weeks ago
7
Missing output/ intermediary files
#113
lauratwomey
closed
2 weeks ago
5
Can this pipeline work with other methods besides 10x?
#112
mpage21
closed
3 months ago
1
cannot cache function 'rdist'
#111
davidebolo1993
closed
3 months ago
1
Transcripts with class_code "u" in gene expression matrix
#110
kataksk
closed
2 weeks ago
2
Use PCR duplicates for error correction?
#109
itslittman
closed
2 months ago
3
Error while running pipeline with 10x -3 prime v4 kit
#108
Bioinfo9
closed
3 months ago
2
Recommendation for read filtering and trimming
#107
HenriettaHolze
closed
3 months ago
2
Support for 5' kit version 2?
#106
itslittman
closed
4 months ago
2
Workflow fails during tag_bam, for some datasets.
#105
ddiez
closed
4 months ago
4
Fusion Detection with wf-single-cell
#104
cristoforo88
closed
4 months ago
1
Problem with symlinks in fastq input directory
#103
HenriettaHolze
closed
3 months ago
2
Error in pipeline:process_bams:process_matrix
#102
HenriettaHolze
closed
4 months ago
6
Compatible with Visium platform
#101
Qirongmao97
closed
4 months ago
1
Error in pipeline:process_bams:tag_bam
#100
HenriettaHolze
closed
4 months ago
6
Gene expression levels and Transcript expression levels don't correlate
#99
pratarora
closed
3 months ago
1
Custom reference genes do not populate feature matrix
#98
Jason-Eigenbrood
closed
2 months ago
13
Problems with v2.0.0
#97
ddiez
closed
4 months ago
5
samtools: unrecognized option '--no-PG'
#96
MaestSi
closed
2 weeks ago
4
Issue running v1.1.0 on demo dataset
#95
MaestSi
closed
5 months ago
2
Only UMAP for one sample in HTML report
#94
ddiez
closed
5 months ago
2
use of licensed conda channels
#93
trum994
closed
4 months ago
1
Next