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I am running below command for downloading databases as described,
`$ howard databases --assembly=hg19 --download-genomes=~/howard/databases/genomes/current --genomes-folder=~/howard/databases/geno…
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Hi Steffi,
could you please install ANNOVAR (Annovar: Functional annotation of genetic variants from high-throughput sequencing data)
Thank you, Maria
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```
Hi, I tested the ANNOVAR pipeline you sent me, but it is failing at the first
step, independently from the .bam file I am choosing as input, here is the
error stream if I launch it command line:…
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perl table_annovar.pl example/ex1.avinput humandb/ -buildver hg38 -out myanno -remove -protocol refGene,cytoBand,genomicSuperDups,esp6500siv2_all,1000g2012apr_all -operation g,r,r,f,f -nastring . -cs…
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Error : The required database file humandb/hg38_ALL.sites.2012_04.txt doesn’t exist.
Im getting the above error in annovar.
Do i need to download any database to continue further.
Anyone PL…
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facing issue while running cancervar.py !!
![Screenshot from 2024-06-27 22-31-00](https://github.com/WGLab/CancerVar/assets/167671737/e74527e3-c76e-476a-9854-78fb3ac66687)
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Slides:
[Annotation of genetic variants using ANNOVAR.pptx](https://github.com/WGLab/-BAIFW_2019_class-/files/3934308/Annotation.of.genetic.variants.using.ANNOVAR.pptx)
Example VCF file:
[exampl…
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https://github.com/MelbourneGenomics/cpipe/blob/dev/docs/outputs.md
This document says annovar is deprecated. That caught me by surprise because annovar is still frequently found in many places in Cp…
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![image](https://user-images.githubusercontent.com/35955715/222949129-b2d48803-5a7e-4436-ad1f-59780cae0cbe.png)
Hello!
I've been trying to run InterVar but ANNOVAR seems to be failing. It shows …
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Hi, I want to use maverick to hunt for genes that cause auto inflammatory diseases. For this I got a bunch of whole genome variant vcfs of patients with those diseases. When I run my vcf files both wi…