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Gritola 5th
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Hi,
Firstly, thank you for this amazing tool! I have a question regarding possible duplicates when running `name2taxid` on a larger list.
My list (column: `name`) below contains 17836 elements…
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Thanks for writing `taxor` and including useful databases!
What the community (or maybe just me) really wants is a database that covers more of the microbial kingdom, but with the benefit of GTDB f…
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Dear Gaia,
I hope this email finds you well.
I’m currently working with the BRCA microbiome data and have encountered a few issues that I hope you can help clarify.
File Quantity: I noticed t…
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Dear emu team,
I am currently using your pipeline to classify ONT fastq. I played a bit with the DB to compare emu-db and SILVA. I found several times, different results in term of number of classi…
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I created two different databases, one with Bacteria+Virus and another with Bacteria+Fungi+Virus, and ran them, resulting in slightly different outcomes. Would it be more accurate to create and run se…
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Hello Ampvis2 people.
Im trying to use Ampvis2 inside ONT AmpSeq package, and I use my reads as an input, along with my metadata file that looks like this
SampleID,Group,Condition
bc92,Group A…
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### Description of feature
Dear developers,
I do have two questions:
1. I want to pass several databases to BTK's nextflow pipeline (v0.6.0) should I pass them several times using --busco li…
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There are more than 700 taxa in Bacteria whose 'emend.' authors have been removed in April 2024 edition compared to March edition. This is detected by comparing the downloaded NameUsage.tsv files.
Ho…
aoern updated
4 months ago
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# Hung up process
I am currently working on completing the GTDB and GenBank updates. This requires ~200,000 and ~1,000,000 sequences to be gathered and sketched. Typically, there has been no issue …