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Depends on:
- #31 for `create_test_bacterium`
- #36 for `get_position`
Bacteria must be able to run and tumble as well as eat nutrients
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Create function for bacteria run where the bacteria should move in a single direction with constant speed. Solves requirement R1.4.
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Phylum Chloroflexota lost although there is an identifier from ENA (Bacteria).
```
{
"count": 1177,
"verbatim_taxonID": "null",
"verbatim_taxonConceptID": "https://www.ebi.ac.uk/ena/browser…
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Hello Team,
I simulated a shotgun metagenomic Nanopore dataset using NanoSim, containing:
65% bacterial sequences from 32 bacterial species
35% human sequences
For profiling, I created a Sylph…
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Dear seqwish team,
I built a bacteria pangenome graph with wfmash+seqwish+bandage, which is from Chlamydia trachomatis species, about 50 genomes/strains with ANI> 99%, I have the attached graph out…
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Hi,
I am just starting to use your package. I have list of bacteria I would like to look for in my samples. However, I did a test with a small test following the tutorial and found that the sapply f…
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Im confident to start the bacteria simulation R1 to R1.3
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Depends on:
- #13
- #10
- #17
Make a function for the bacteria to follow the chemotaxis
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Thanks for writing `taxor` and including useful databases!
What the community (or maybe just me) really wants is a database that covers more of the microbial kingdom, but with the benefit of GTDB f…
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Plan: amikacin MICs with all three bacteria (and _S aureus_ control) to be done "by eye" and "by plate reader" i.e. with resazurin. Will compare results.