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ekg
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seqwish
alignment to variation graph inducer
MIT License
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compiltion fails with clang-19: error: no member named 'm_select1' in 'louds_tree<bit_vec_t, select_1_t, select_0_t>'; did you mean 'm_bv_select1'?
#126
yurivict
opened
6 days ago
0
Set number of threads for ips4o::parallel::sort
#125
nsmlzl
closed
1 month ago
0
CPU utilization is higher than set with --threads argument
#124
nsmlzl
closed
1 month ago
0
interpretation of bacteria pangenome graphs
#123
jianshu93
opened
2 months ago
6
please add a possibility to restrict the disk usage of seqwish
#122
subwaystation
opened
8 months ago
0
Genome graph induced from wfmash+seqwish is still biased
#121
yihangs
opened
10 months ago
3
Does seqwish supports output with nodes as single characters?
#120
YX-Xiang
opened
10 months ago
2
Do not use -latomic on macOS
#119
kojix2
opened
1 year ago
2
Remove uses of get_current_dir_name
#118
kojix2
opened
1 year ago
0
Building Seqwish on macOS
#117
kojix2
opened
1 year ago
0
Dead end nodes of 0 length
#116
casper-schutte
opened
1 year ago
1
Build a static and shared library and link to the static one by default.
#115
Millak
opened
1 year ago
0
error: no member named 'parallel' in namespace 'ips4o'
#114
yurivict
opened
1 year ago
2
make newer `gcc` happy
#113
AndreaGuarracino
closed
1 year ago
2
Compilation errors GCC v13.1
#112
subwaystation
closed
1 year ago
0
Seqwish graph underaligned
#111
cgroza
closed
1 year ago
2
Fix versioning
#110
AndreaGuarracino
closed
1 year ago
0
abnormal alignments
#109
sdws1983
opened
1 year ago
16
Graph to Graph Alignment
#108
8banzhuan
opened
1 year ago
5
always emit long version format
#107
AndreaGuarracino
closed
2 years ago
0
Issue #104 - Use -march=native as default
#106
martin-g
closed
2 years ago
5
add how to build with `clang` in the README
#105
AndreaGuarracino
closed
2 years ago
0
Still generic on aarch64
#104
AndreaGuarracino
closed
2 years ago
6
What is the special meaning of this algorithm：lt_deBruijn_to_idx[((x&-x)*deBruijn64)>>58]
#103
Wenmj201582
closed
2 years ago
1
fix compilation with new compilers
#102
AndreaGuarracino
closed
2 years ago
0
Compilation issue - ipso::parallel is not recognized
#101
subwaystation
closed
2 years ago
3
How should a simple test be performed after seqwish is installed
#100
Wenmj201582
closed
2 years ago
3
Fix the build for Linux ARM64
#99
julien-faye
closed
2 years ago
9
[Question] Is Linux ARM64 a supported architecture?
#98
markjens
closed
2 years ago
7
patch release for Bioconda?
#97
rpetit3
closed
2 years ago
2
Temporary directory management
#96
AndreaGuarracino
closed
2 years ago
0
how to avoid having a cyclic graph
#95
khodor14
closed
2 years ago
3
sparsify matches
#94
ekg
closed
2 years ago
0
`cmake` tweaks and `atomic_queue` update for future portability
#93
AndreaGuarracino
closed
2 years ago
0
seqwish::compact error: found 0 overlaps for seq
#92
cgroza
closed
2 years ago
4
[FEATURE]: `seqwish` can emit GBZ format
#91
subwaystation
opened
2 years ago
0
[FEATURE]: `seqwish` can handle agc compressed whole genome assemblies
#90
subwaystation
opened
2 years ago
0
`seqwish` can display its current version
#89
subwaystation
closed
2 years ago
0
Parallelize the mapping of collection of bases from the full sequence set into a dense range
#88
AndreaGuarracino
closed
2 years ago
3
no more jemalloc
#87
ekg
closed
3 years ago
0
terminate called after throwing an instance of 'std::out_of_range'
#86
dirkjanvw
closed
2 years ago
1
Switch from Travis to github workflows for building and testing
#85
AndreaGuarracino
closed
3 years ago
0
added jemalloc in the README
#84
AndreaGuarracino
closed
3 years ago
0
Handy parameters
#83
AndreaGuarracino
closed
3 years ago
0
add BIOCONDA and GUIX installation info in the README
#82
AndreaGuarracino
closed
3 years ago
0
No conda package for newer versions
#81
Masaki-Hongo
closed
3 years ago
3
don't close through Ns
#80
ekg
closed
3 years ago
0
less trusting the correctness of the inputs
#79
AndreaGuarracino
closed
3 years ago
1
use jemalloc
#78
ekg
closed
3 years ago
0
distrust cigar mismatch characters
#77
ekg
closed
3 years ago
1
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