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wejlab
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MetaScope
An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)
GNU General Public License v3.0
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Is there any difference in algorithm between this and Pathoscope
#33
Missthepast
closed
6 days ago
1
MetaBlast
#32
seanlu96
closed
1 month ago
0
Taxonomizr + Removed rblast
#31
seanlu96
closed
3 months ago
0
Update bam file and metascope blast
#30
seanlu96
closed
6 months ago
0
Updating metascope_id for metablast
#29
seanlu96
closed
6 months ago
1
logical result
#28
esraagithub
closed
2 weeks ago
1
Create metascope_blast.R
#27
seanlu96
closed
6 months ago
0
metascope for assembled contig?
#26
esraagithub
closed
6 months ago
3
metascope_id() output: column header definition
#25
esraagithub
closed
6 months ago
1
Computational requirement for metascope
#24
esraagithub
closed
7 months ago
1
download_refseq: bfcadd() failed; see warnings()
#23
esraagithub
closed
7 months ago
5
metascope_id running into ID length issues
#22
susheelbhanu
closed
10 months ago
6
`align_file` flag in align_target_bowtie not working as expected
#21
susheelbhanu
closed
11 months ago
1
Setting .cache folder
#20
susheelbhanu
closed
12 months ago
1
unique_accession_genome_name
#19
bheimbu
closed
1 year ago
3
Errror generating target and filter index files
#18
VanishingRasengan
closed
1 year ago
7
taxonomy table not found
#17
tbazilegith
closed
2 years ago
2
Using another reference database
#16
ecastron
closed
10 months ago
9
Update download_refseq.R
#15
hjfan527
closed
2 years ago
0
Some error when I run the download_refseq
#14
kunlingtianxia
closed
2 years ago
10
Fixed a few bugs in download_refseq()
#13
rvarki
closed
2 years ago
0
Updated Vignette
#12
rvarki
closed
2 years ago
0
Rahul MetaScope version
#11
rvarki
closed
2 years ago
1
MetaScope Update
#10
rvarki
closed
2 years ago
0
No available genome for bacteria - object 'combined_fasta' not found
#9
tyden46
closed
2 years ago
1
Fixed an error in download_refseq.R and mk_subread_index.R
#8
rvarki
closed
3 years ago
0
parallelize metascope_id
#7
wevanjohnson
closed
4 years ago
0
parallelize metascope_id
#6
wevanjohnson
closed
4 years ago
0
adding tidyverse as a requirement
#5
wevanjohnson
closed
4 years ago
0
Fixing metascope_id documentation
#4
wevanjohnson
closed
4 years ago
0
updated metascope_id function
#3
wevanjohnson
closed
4 years ago
0
Fix small error in examples for align_target
#2
wevanjohnson
closed
4 years ago
0
Update documentation for align_target and filter_host
#1
wevanjohnson
closed
4 years ago
0