-
Function description has the parameter `store_bdg`, it's in the signature, but calling snap.tl.macs3() with store_bdg results in,
`TypeError: macs3() got an unexpected keyword argument 'store_bdg'…
-
Hi,
I used the following command to generate FE ppois signal track:
`macs2 bdgcmp -t E1-H3K27ac_treat_pileup.bdg -c E1-H3K27ac_control_lambda.bdg -m FE -o E1-H3K27ac_FE.bdg`
`macs2 bdgcmp -t E1-H…
-
Depending on where it's used, it should be replaced either with BDG, or with normal echoes.
-
Hi taoliu,
Dose the macs2 normalize the values in pileup.bdg ?
Thanks you very much.
-
Attempting to update dependencies Scala to version 2.10.4, Spark to version 1.1, and ADAM to version 0.14.1-SNAPSHOT fails to compile
``` bash
$ mvn clean install
...
[INFO] Compiling 6 Scala sources…
-
See
https://github.com/bigdatagenomics/bdg-formats/issues/202
https://github.com/heuermh/bdg-formats/blob/docs/docs/source/transcript-effects.md
-
I am looking for the MACS2 p-value signal for every base-pair, similar to the bigwigs available from [ROADMAP](https://egg2.wustl.edu/roadmap/data/byFileType/signal/consolidated/macs2signal/pval/) or …
-
In ADAM/Mango a genotype call is defined as a list of `GenotypeAllele` here:
https://github.com/bigdatagenomics/bdg-formats/blob/master/src/main/resources/avro/bdg.avdl#L966
`GenotypeAllele` is de…
jpdna updated
7 years ago
-
## lien avec des objects BDGS
- [x] appel du flux WMS datashom et enregistrement en BDD
- [x] création de la table BDGS
- [x] ajout des champs bdgs_id des la table bpn_objects ou d'une table de lie…
-
Hi. I ran execute MACS2 as below:
`$macs2 callpeak -t ID1_sort.bam -c HALO_sort.bam -g 2.1e9 -B -f BAMPE -n ID1-HALO --outdir macs2-out 2> err-macs2.log`
I have the following outputs:
```
ID1-HA…