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Right now this visualization only supports the report page for genes or proteins. In this mode, it will run [this query](https://github.com/yochannah/cytoscape-intermine/blob/master/js/query/query.jso…
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We'd like to show a list of BlueGenes data vis tools on the intermine site.
## Task:
1. set up a new directory under `/content` called `/tools`
2. Create a file in this folder that will outpu…
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The Bluegenes Less CSS sources contain a lot of global selectors that end up changing the styling of visualisation tools.
Here is one example with https://github.com/intermine/bluegenes-protein-vis…
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on this link
http://met1.gen.private.cam.ac.uk:5050/
this list of 143 IDs shows genetic and physical interactions network
[list.txt](https://github.com/intermine/bluegenes/files/8886138/list.tx…
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Hi. I explore the possibility to use sourmash to identify isolate origin based on nanopore data. Each sample is supposed to have only one species. I know that ONT reads are not ideal for a k-mer appro…
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I think the current default is 1e8, with 4 tables, which is 50MB.
At some point I calculated the number of protein k-mers in ENSEMBL human as ~4 x 10^7, so 10^8 is a pretty good upper bound, and …
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I am in the process of determining whether sourmash is the right tool for my metagenomic analyses. I am mostly using ONT data at the moment. Similar to previous posts (e.g. https://github.com/sourmash…
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Hi,
We used to have a gene. list network widget but it is now missing:
Is there a list of available widgets anywhere so that we can. see which ones could be useful?
thanks!
Val
@kim…
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The query builder is pretty much the only page that's impossible to figure out unless someone walks you through it.
Here would be a useful place to have a tour/tutorial. If we end up creating a vid…
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Hi, a big thank you to the developers of this useful and versatile tool. I am using sourmash to detect and remove undesired prokaryotes from WGS datasets in my de-novo assembly pipeline of prokaryotic…