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Dear Marvin,
I would like to use your tcga_segmentation tool for tumor tissue prediction of primary breast cancer. I have finished the preprocessing step without any issues. I used the following co…
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The GDC offers multiple data aside from sparql in flat files types including
- methylation
- copy number segmentation calls
- maf files
If we have this, and also create more dense visualizatio…
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When running tissue segmentation (red) followed by nuclei segmentation (green) the segmentation color for the nuclei segmentation changes from green to red after inference. If I change the color of on…
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Hi,
I'm trying to run
```
br.tl.node_classification(
bg, bg.spots_all.copy(),
n_neighbors = 30,
num_chunks = 500,
)
```
On a Xenium data release from 10X (brain) with 406580…
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> Beyond sample curation and basic pathologic characterization, the digitized H&E-stained images of TCGA samples remain underutilized. To highlight this resource, we present mappings of tumor-infiltra…
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Hello, dear blogger
Do you have details of the breast cancer patients in the DMR-IR-BC dataset that are labelled left or right breast?
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In the Evaluation/sampling section, img_dir and seg_dir are needed to generate images, but where do I find them? Also, why do we need image inputs to do sampling? I think DDPM/DDIM starts with a noise…
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A list of dataset files we believe are missing. Will be updated as they're reported / found. Feel free to comment to report additional ones.
- [ ] 108, Waveform Database Generator (Version 2)
V…
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Dear author,
I read your paper 'Segmentation of Nuclei in Histopathology Images by deep regression of the distance map' and I found your dataset here. However, we proposed a method of post-process…
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So I found this interesting paper and wanted to know your thoughts :
[A Fast and Refined Cancer Regions Segmentation Framework in Whole-slide Breast Pathological Images](https://www.nature.com/arti…