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Dear Author,
I hope this message finds you well. I have been working with the BayesPrism package for bulk RNA-seq deconvolution, and I have a few questions that I was hoping you might clarify.
O…
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Hi all,
I am really interesting in using your R package to deconvulte some of my bulk RNA-seq data. I was just trying to use the example data which is loaded with the package but I have already encou…
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[ ] Add a slide on publicly available data, how to access it and how to clean it up (maybe share a script for clean up?)
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Hello,
Thank you for amazing tool.
I am new to CNV analysis using RNA-Seq.
Is it possible to use CaSpER for a single bulk RNA-Seq sample such as a tumor sample from a single patient?
Thank you…
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Hello, thank you for providing such a convenient method, I would like to know if the input bulk transcriptome data must be count? Can I use tpm as input?
thanks
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The @PavlidisLab/curation team compiled a list of single-cell experiments that need special treatment on import. We can convert those into test cases.
## Bulk/single-cell mix
Contains a mixture …
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Hi team,
In the Redeconve manual.ipynb, I noticed that you mentioned Redeconve can also be used for bulk RNA-seq deconvolution. Does this mean we can use scRNA as reference to deconvolute bulk RNA …
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What do you recommend to try out for "big data" but for RNA seq instead of single cell?
mdanb updated
2 years ago
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Hello!
I've been having issues adapting bulk rna seq data into cellchats pipeline. I want to compare the bulk rna sequencing reads of three purified celltypes with one purified celltype, and find w…