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Hello VIP team,
I have been tasked by my structure @bag-cnag to make VIP plugging work for cellxgene.
I am sharing the result here, and am offering to contribute it to the repo via a pull reques…
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Hi,
I would like to deploy the cellxgene VIP result with Heroku
and would like to know how to modify the "Dockerfile" provided by cellxgene
Here is my modified version and I'm getting this …
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In line with what the title asks - I've been using CellxGene VIP for downstream analysis, and recently found the newer ExCellxGene for preprocessing.
Is it possible to combine these two tools?
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Hello,
I seem to be having an issue with opening h5ad files that have a small number of cells recorded - when I subset working h5ad files to 9 cells, the file does not load properly in cellxgene V…
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HI,
I have three data in my seurat object
object@assays$RNA@counts
object@assays$RNA@data
object@assays$RNA@scale.data
```
sceasy::convertFormat(object, from="seurat", to="anndata",
…
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Dear cellxgene_vip authors,
I am looking into the script used for DEG analysis VIPInterface.py and can't figure out where function "compute_diffexp_ttest"
come from. I guess it is corresponding to …
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When I run cellxgene I get the button and everythiing but when I try to make a violin plot or any other plot I get an error. This is what I get after running cellxgene launch --host localhost --port 5…
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from @ademorree:
> What would be really cool is if the software could replicate the cell gating strategies from FACS software. In FACS software software you can plot all cells in 2d for two parame…
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Hi there,
so I have started a cellxgene project and as I want to use multiple datasets and also keep the plug in VIP, I have combined both extensions ([](https://githubhot.com/repo/interactiverepo…