issues
search
cellgeni
/
sceasy
A package to help convert different single-cell data formats to each other
GNU General Public License v3.0
344
stars
52
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
When encountering a NumPy-related error while using a conversion function on an Seurat object
#91
liuzhuoliang123
opened
1 week ago
1
Question regarding conversion time from AnnData to Seurat object
#90
qianzach
opened
1 month ago
0
Non-existent Function Documentation
#89
DarioS
opened
1 month ago
0
I wonder that the h5ad file convert from Seurat, if it was read in scapy, where is the raw dada?
#88
BioinfoXP
opened
3 months ago
0
Converting Xenium object from R
#87
man154
opened
3 months ago
0
Failure to convert h5ad to Rds
#86
RookieA1
opened
4 months ago
4
failure to convert attributeError: 'dict' object has no attribute 'dtype'
#85
Flu09
opened
5 months ago
0
convert h5ad to seruat problem (pandas)
#84
Flu09
closed
5 months ago
3
Failure to convert SingleCellExperiment (trajectory analysis object) to h5ad
#83
Yanst86
opened
6 months ago
0
no slot of name "meta.features" for this object of class "Assay5"
#82
Rohit-Satyam
opened
6 months ago
1
convertFormat function do not support v5
#81
ixxmu
opened
7 months ago
0
No module named 'numpy.core._multiarray_umath'
#80
chrarnold
opened
9 months ago
0
Not possible to install from conda package
#79
stevekm
opened
10 months ago
1
Convert h5ad file to seurat file
#78
sanderslhc
opened
10 months ago
8
h5ad to Seurat conversion "AttributeError: 'dict' object has no attribute 'dtype'"
#77
jestlin15
opened
11 months ago
1
Seurat Assay5
#76
ValYianni
opened
11 months ago
5
negative length vectors are not allowed : Error when converting anndata to seurat
#75
bapoorva
opened
11 months ago
1
Export feature loadings in `anndata2seurat`
#74
Zepeng-Mu
opened
1 year ago
0
Error: Cannot find 'class' in this Seurat object
#73
ShanSabri
closed
1 year ago
1
Hello everyone, I am having issues running sceasy for conversion from sce object to anndata. Following repo instructions, I run:
#72
Pancreaticpathway
opened
1 year ago
2
Spatial data
#71
AndrewSkelton
opened
1 year ago
2
memory issues trying to convert from anndata to Seurat
#70
massisnascimento
opened
1 year ago
0
seurat to anndata formatting adata.X as CSC sparse resulting in inefficient handling
#69
dpcook
opened
1 year ago
0
Evaluation error: Unable to convert R object to Python type
#68
Christ14n97
opened
1 year ago
0
Problems setting up the proper environment
#67
mariapozo
opened
1 year ago
1
RStudio crashing with convertFormat - Anndata to Seurat
#66
sarakn97
opened
1 year ago
1
error convert anndata to seurat
#65
Polligator
closed
1 year ago
2
Add `tolower` to format check
#64
samuel-marsh
opened
1 year ago
0
changed colname attributes for sce2loom
#63
SimonDMurray
opened
1 year ago
0
Would it be possible to get a new release of SCEasy so that it is picked up by bioconda?
#62
pcm32
opened
1 year ago
3
[import of anndata] Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments
#61
siberianisaev
closed
1 year ago
2
Fix issue #56
#60
Lila14
closed
1 year ago
1
Converting SCE to LOOM obs and var attribute names
#59
SimonDMurray
opened
1 year ago
1
fix path reading in anndata2cds
#58
wee-snufkin
opened
1 year ago
0
Updating dependencies
#57
errcricket
closed
1 year ago
1
Error when converting anndata to seurat
#56
Merlin2333
closed
1 year ago
2
Error for anndata to seurat conversion
#55
EliseAld
closed
2 years ago
2
Anndata to Seurat Object, Error in match
#54
tomthun
opened
2 years ago
4
sce to anndata - Adata does not contain a `counts` layer in `adata.layers[`counts`]`
#53
stemangiola
opened
2 years ago
1
Fix anndata2seurat() for Seurat v4
#52
nh3
closed
2 years ago
0
Add support for AnnData -> monocle CDS conversion
#51
nh3
closed
2 years ago
0
Code clean up
#50
nh3
closed
2 years ago
0
The big issue about converting h5ad into seurat rds
#49
honghh2018
closed
2 years ago
2
fix: add pronunciation
#48
seve
opened
2 years ago
1
from AnnData to Seurat, AttributeError: 'dict' object has no attribute 'dtype'
#47
ekernf01
closed
2 years ago
2
sce to anndata missing colPair in tbsp
#46
Zepeng-Mu
opened
2 years ago
0
Error when anndata to seurat
#45
GouQiao
opened
2 years ago
3
Unable to convert Seurat object to H5AD
#44
dfermin
opened
2 years ago
2
Error in AnnData to Seurat
#43
Zethson
closed
2 years ago
1
added uns to misc slot migration in anndata2seurat
#42
metakuni
closed
2 years ago
2
Next