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cellgeni
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sceasy
A package to help convert different single-cell data formats to each other
GNU General Public License v3.0
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added uns to misc slot migration in anndata2seurat
#41
metakuni
closed
2 years ago
0
How should I run sceasy?
#40
AAA-3
opened
2 years ago
1
sce to anndata error
#39
hchintalapudi
opened
2 years ago
0
Allow anndata2seurat to handle R package version of anndata
#38
bschilder
opened
3 years ago
0
Which seuart data was converted to adata.X?
#37
FADHLyemen
opened
3 years ago
5
Can't install sceasy with Conda
#36
aghr
opened
3 years ago
4
AnnData -> SingleCellExperiment planned?
#35
TheAustinator
opened
3 years ago
2
Error converting loom to anndata
#34
Vinayaksiv-17
opened
3 years ago
0
Error in seurat to Anndata conversion
#33
HaikuoLi
opened
3 years ago
3
delineate R package with conda environment (suggestion)
#32
ghost
opened
3 years ago
0
invalid loom converted from sce
#31
akhst7
closed
3 years ago
1
Default conda installation instructions for searat -> h5ad convert not working
#30
inodb
closed
3 years ago
1
conversion to loom from sce
#29
akhst7
closed
3 years ago
1
AnnData to Seurat: fix dimensions of raw layer when needed
#28
pablo-gar
closed
3 years ago
3
Fix dimensions of raw layer when needed (anndata2seurat)
#27
pablo-gar
closed
3 years ago
0
Issue converting Seurat obj to h5ad Anndata
#26
akhst7
closed
3 years ago
4
AnnData to Seurat: Add functionality to store X in data and raw.X in counts
#25
pablo-gar
closed
3 years ago
3
error converting loom to sce
#24
akhst7
closed
3 years ago
5
Selecting assay type to convert in SCeasy
#23
RolantusdataExp
closed
3 years ago
5
Should sceasy try to updateObject when failing to read an SCE object?
#22
pcm32
opened
3 years ago
2
Question about subseting Seurat object
#21
levinhein
closed
3 years ago
0
Add LoomExperiment and SingleCellExperiment requirements
#20
pablo-gar
closed
3 years ago
1
Issue running sceasy
#19
vtosevski
closed
3 years ago
2
Is it possible to view the sequence of a specific gene from any Seurat function?
#18
levinhein
closed
3 years ago
1
Transformation from AnnData/Loom produces SCE object that R doesn't seem to like
#17
pcm32
closed
3 years ago
2
Seurat to SCE error "Error: Unsupported conversion from "seurat" to "sce"
#16
levinhein
closed
3 years ago
1
Size limit of Seurat object to convert to Anndata
#15
levinhein
closed
3 years ago
1
ERROR IN sceasy instructions, loompy part
#14
levinhein
closed
3 years ago
0
ERROR IN sceasy instructions, loompy part
#13
levinhein
closed
3 years ago
1
[Minor] Conda installation instructions.
#12
ambrosejcarr
closed
3 years ago
1
No anndata to other format conversion
#11
likejie
closed
3 years ago
4
Enable anndata to seurat conversion
#10
mckinsel
closed
3 years ago
1
SCE to AnnData
#9
twfs
closed
3 years ago
2
Can't save object (assay = SCT, slote = scale.data) because of meta.features
#8
mariafiruleva
opened
4 years ago
0
Installation issue with conda
#7
davemcg
closed
4 years ago
2
Question: Can you also convert anndata objects created with newer anndata versions?
#6
LustigePerson
closed
4 years ago
2
Plans to submit to BioC?
#5
LTLA
opened
4 years ago
3
Error in seurat to anndata
#4
massonix
opened
4 years ago
17
Evaluation error: Exception: Data must be 1-dimensional
#3
mariafiruleva
closed
4 years ago
4
convert to loom from sce error
#2
SimonDMurray
closed
4 years ago
12
update travis configuration
#1
nh3
closed
4 years ago
0
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