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cellgeni
/
sceasy
A package to help convert different single-cell data formats to each other
GNU General Public License v3.0
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error raised while reading key '/layers' of type <class 'h5py._hl.group.Group' when converting h5ad to seurat object
#93
pandaqiuqiu
opened
1 week ago
0
use_condaenv error: in python_config_impl(python)
#92
JerryZhang-1222
closed
1 week ago
0
When encountering a NumPy-related error while using a conversion function on an Seurat object
#91
liuzhuoliang123
opened
2 months ago
2
Question regarding conversion time from AnnData to Seurat object
#90
qianzach
opened
3 months ago
0
Non-existent Function Documentation
#89
DarioS
opened
3 months ago
0
I wonder that the h5ad file convert from Seurat, if it was read in scapy, where is the raw dada?
#88
BioinfoXP
opened
4 months ago
0
Converting Xenium object from R
#87
man154
opened
5 months ago
0
Failure to convert h5ad to Rds
#86
RookieA1
opened
6 months ago
4
failure to convert attributeError: 'dict' object has no attribute 'dtype'
#85
Flu09
opened
6 months ago
0
convert h5ad to seruat problem (pandas)
#84
Flu09
closed
6 months ago
3
Failure to convert SingleCellExperiment (trajectory analysis object) to h5ad
#83
Yanst86
opened
8 months ago
0
no slot of name "meta.features" for this object of class "Assay5"
#82
Rohit-Satyam
opened
8 months ago
1
convertFormat function do not support v5
#81
ixxmu
opened
8 months ago
0
No module named 'numpy.core._multiarray_umath'
#80
chrarnold
opened
11 months ago
0
Not possible to install from conda package
#79
stevekm
opened
11 months ago
1
Convert h5ad file to seurat file
#78
sanderslhc
opened
1 year ago
8
h5ad to Seurat conversion "AttributeError: 'dict' object has no attribute 'dtype'"
#77
jestlin15
opened
1 year ago
1
Seurat Assay5
#76
ValYianni
opened
1 year ago
5
negative length vectors are not allowed : Error when converting anndata to seurat
#75
bapoorva
opened
1 year ago
1
Export feature loadings in `anndata2seurat`
#74
Zepeng-Mu
opened
1 year ago
0
Error: Cannot find 'class' in this Seurat object
#73
ShanSabri
closed
1 year ago
1
Hello everyone, I am having issues running sceasy for conversion from sce object to anndata. Following repo instructions, I run:
#72
Pancreaticpathway
opened
1 year ago
2
Spatial data
#71
AndrewSkelton
opened
1 year ago
2
memory issues trying to convert from anndata to Seurat
#70
massisnascimento
opened
1 year ago
0
seurat to anndata formatting adata.X as CSC sparse resulting in inefficient handling
#69
dpcook
opened
1 year ago
0
Evaluation error: Unable to convert R object to Python type
#68
Christ14n97
opened
1 year ago
0
Problems setting up the proper environment
#67
mariapozo
opened
1 year ago
1
RStudio crashing with convertFormat - Anndata to Seurat
#66
sarakn97
opened
1 year ago
1
error convert anndata to seurat
#65
Polligator
closed
1 year ago
2
Add `tolower` to format check
#64
samuel-marsh
opened
1 year ago
0
changed colname attributes for sce2loom
#63
SimonDMurray
opened
1 year ago
0
Would it be possible to get a new release of SCEasy so that it is picked up by bioconda?
#62
pcm32
opened
1 year ago
3
[import of anndata] Error in `match(x, table, nomatch = 0L)`: 'match' requires vector arguments
#61
siberianisaev
closed
2 years ago
2
Fix issue #56
#60
Lila14
closed
1 year ago
1
Converting SCE to LOOM obs and var attribute names
#59
SimonDMurray
opened
2 years ago
1
fix path reading in anndata2cds
#58
wee-snufkin
opened
2 years ago
0
Updating dependencies
#57
errcricket
closed
1 year ago
1
Error when converting anndata to seurat
#56
Merlin2333
closed
1 year ago
2
Error for anndata to seurat conversion
#55
EliseAld
closed
2 years ago
2
Anndata to Seurat Object, Error in match
#54
tomthun
opened
2 years ago
4
sce to anndata - Adata does not contain a `counts` layer in `adata.layers[`counts`]`
#53
stemangiola
opened
2 years ago
1
Fix anndata2seurat() for Seurat v4
#52
nh3
closed
2 years ago
0
Add support for AnnData -> monocle CDS conversion
#51
nh3
closed
2 years ago
0
Code clean up
#50
nh3
closed
2 years ago
0
The big issue about converting h5ad into seurat rds
#49
honghh2018
closed
2 years ago
2
fix: add pronunciation
#48
seve
opened
2 years ago
1
from AnnData to Seurat, AttributeError: 'dict' object has no attribute 'dtype'
#47
ekernf01
closed
2 years ago
2
sce to anndata missing colPair in tbsp
#46
Zepeng-Mu
opened
2 years ago
0
Error when anndata to seurat
#45
GouQiao
opened
2 years ago
3
Unable to convert Seurat object to H5AD
#44
dfermin
opened
2 years ago
2
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