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**Describe the bug**
The Metric `cell_cycle_conservation` fails with datasets from the Cell x Gene Census:
```
ValueError: cell cycle genes not in adata
organism: human
varnames: ['ENSG00000105…
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We have downloaded loftee plugin from grch38 branch and tried to use it but encountered the below error. Could you please have a look and assist ?
WARNING: Failed to compile plugin LoF: Attempt to …
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## Description
When trying to explore items from this provider/source, the API says the param value is invalid despite being included (last) in the exact list of valid options, making this provider…
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### Setup
I am reporting a problem with Biopython version 1.84, Python version 3.12.3, and operating
system as follows:
```python
3.12.3 | packaged by conda-forge | (main, Apr 15 2024, 18:50:4…
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Decision: Must
Requirement: Personal Profile Management
T-Shirt: XXL
As: a registered user,
I want: to manage my profile details, including my username, avatar, bio, interest tags, posts, event histor…
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### Description of feature
Hi,
The values in the Aggregate Score of the results table are really hard to read when the score is high and the background color gets very dark, it would be nice if th…
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Hello!
I'm running vep from the https://github.com/konradjk/loftee/tree/master branch,
${DIR}/vep -i /dt19/share/BC0001/Level3/20210715/vcf/S002_DNM_V4_7_filtered_noAS.1.3.2.siteonly.dn.vcf.gz \
…
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I ran a dead link check and found a few issues:
http://marinebon.org (full scan)
Generated: 2/28/2023 3:59:20 PM
100% scanned - 939/939 URLs checked, 912 OK, 27 failed
Error | URL | Anchor …
7yl4r updated
3 months ago
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Hi friends @konradjk @oleraj,
LOFTEE is a great work! Thanks for your team's contribution.
I am trying to use LOFTEE with GRCh38 vcf.gz files and I meet a problem. I have tested with #51 and #58…
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Hi,
I am trying to use loftee plugin (Grch38) as a part of VEP and I got the following error.
Could you please help?
Thanks in advance
**Command used**
docker run -t -i -v /home/vep_data/:/…