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Hello Alex,
I have a small question about RRBS methylation data.
It is my question that I post before.
My question this time is how to use RRBS methylation data to do a boxplot based on CpG s…
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It would be a great option to extend the current BED file highlighting functionality `--highlight_bed` to allow BED files to be displayed as separate tracks, as for example if you want to see CpG isla…
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Hi,
The output of pb-CpG-tools includes modification probability (column 4) and discretized modification probability (column 9) for each CpG site. I am wondering how should I consider using such i…
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Thanks for creating and actively maintaining this amazing tool! I'm a first-time user of Bismark. I'm running this pipeline starting from FastQC, Trim Galore, Bismark aligner, and Bismark methylation …
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Hi!
I've just been your new paper on epigenetic predictors of maximum lifespan (It's great stuff!)
In the paper you say:
"Specifically, we calculated the mean methylation value for each CpG wit…
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Hello and congratulations with the publication.
Not sure if this is a place to ask - but I was wondering, is there a list of Illumina methylation microarray CpGs used by your PCR2 aging index? I we…
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Good day,
I would like to perform Differential methylation scoring.
Is there a way to identify the number of hypo and/or hyper differentially methylated regions in introns, exons, promoters, TSS, 5′…
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![bismark_mbias-CpG_R1](https://github.com/FelixKrueger/Bismark/assets/66713655/44c3c186-28de-4329-bafb-53805a24d9c0)
![bismark_mbias-CpG_R2](https://github.com/FelixKrueger/Bismark/assets/66713655/c…
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Hello @ArtRand,
Thank you for your tool, It helps me a lot,
I have a couple of questions related to the DMR score when I am trying to find the DMR (TSS regions provided by a bed file) in 2 samples w…
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Hey I recently am running modkit on/around some structural variant calls. I was interested in using `modkit extract` to extract the methylation status within each reads on and around SVs. However, wh…