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PacificBiosciences
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pb-CpG-tools
Collection of tools for the analysis of CpG data
BSD 3-Clause Clear License
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The ML threshold for a reliably methylated cytosine
#70
leon945945
opened
1 month ago
0
modification probability vs discretized modification probability
#69
Jinyulin515
opened
1 month ago
0
modsites-mode
#68
wittney-m
opened
1 month ago
3
Criterion for error: Read sequence is too short for MM tag offsets in bam record
#67
aewrwdw
opened
4 months ago
1
# Questions about jasmine
#66
xiangpingyu
closed
4 months ago
1
cannot get 5mc probability Revio platform
#65
Duyh814
closed
4 months ago
4
About haplotype output
#64
woshiakai5525
closed
7 months ago
3
Empty BED file
#63
roybarkan2020
closed
7 months ago
0
Tools for mapping methylation and expression relationships
#62
Wenwen012345
closed
4 months ago
5
Without the MM and ML auxiliary tags
#61
lixiang117423
closed
4 months ago
0
Read sequence is too short for MM tag offsets in bam record
#60
hasindu2008
closed
4 months ago
2
Add to bioconda
#59
mobilegenome
closed
8 months ago
1
need clarifications on the workflow
#58
splaisan
closed
8 months ago
1
the question about hap1 and hap2
#57
crazysummerW
closed
9 months ago
2
Error: Read sequence is too short for MM tag in record: {qname}
#56
glogsdon1
closed
10 months ago
7
genetic variants on CpG sites
#55
qsonehara
opened
11 months ago
3
difference betwwen -m denovo and reference
#54
Duyh814
closed
11 months ago
3
Suggestions for indicating methylation regions on circos plots?
#53
Wenwen012345
closed
11 months ago
1
A pipeline for known parental haplotypes?
#52
gokalpyildirir
closed
1 year ago
4
Primrose unavailable
#51
scorreard
closed
1 year ago
2
Availability of jasmine
#50
PengNi
closed
1 year ago
1
Run the pipeline on prokaryotic dataset
#49
pailloufat-stack
closed
11 months ago
7
Can I use CpG tools if I have other basemods in the file
#48
mrvollger
closed
1 year ago
2
Error with haplotagged BAM files - Unexpected HP tag format
#47
Audald
closed
1 year ago
4
Supplementary reads not processed - aligned_bam_to_cpg_scores
#46
Audald
closed
1 year ago
4
Segmentation fault with CRAM files - aligned_bam_to_cpg_scores
#45
Audald
closed
1 year ago
3
avg mod score and avg unmod scores
#44
olaraym
closed
1 year ago
4
how to prepare input data for phasing 5mc methylation analysis?
#43
oceancongliu
closed
1 year ago
6
running error
#42
yueqitaoo
closed
1 year ago
5
aligned_bam_to_cpg_scores v2.1.0 raises an error
#41
JBinkowski
closed
1 year ago
4
Is CpG status predicted at insertion variants?
#40
elcortegano
opened
1 year ago
4
Update numpy version for pandas compatability
#39
williamrowell
closed
1 year ago
0
Runtime dependency conflict
#38
williamrowell
closed
1 year ago
0
strand specific extraction
#37
xiaoyunguo
closed
1 year ago
2
Models suitable for plants?
#36
hrpelg
closed
1 year ago
2
ModuleNotFoundError: No module named 'packaging'
#35
krobison13
closed
1 year ago
2
error installing pb-CpG-tools
#34
Mjaraespejo
closed
1 year ago
2
DtypeWarning: Columns (8) have mixed types
#33
elcortegano
closed
1 year ago
2
Fix MM tag parser
#32
ctsa
closed
1 year ago
1
Error: concurrent.futures.process.BrokenProcessPool
#31
yimingzhu100
closed
1 year ago
3
What is the different between pb model and HK model
#30
hmyh1202
closed
1 year ago
1
Why skip 40 aligned_pairs?
#29
bing2022ca
closed
1 year ago
1
Include phaseset information
#28
AngelaQChen
closed
1 year ago
1
Can I used minimap2 for alignment ?
#27
hmyh1202
closed
1 year ago
1
Error - pileup_model model
#26
jainy
closed
1 year ago
13
Setup initial unittest step on gh actions
#25
ctsa
closed
1 year ago
1
Fix parse for empty MM tag segment
#24
ctsa
closed
1 year ago
0
Add checks for MM and ML tag consistency
#23
ctsa
closed
1 year ago
1
question for output
#22
hmyh1202
closed
2 years ago
5
bug fix in cg_sites_from_fasta()
#21
dportik
closed
2 years ago
0
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