-
Type `help` or `browse(help)` to begin
joern> Would you like to save changes? (y/N)
Dataset chunk 0 not processed.
Index: 497 entries, 2 to 3330
Data columns (total 4 columns):
# Column N…
-
Hello, thank you so much for such a helpful tool.
I would like to ask whether we can know which CpG sites from the same molecule from the result of "modkit pileup" command.
-
I was trying to run the example/main.py but came across this error. How can I fix it?
`UserWarning: conda builds of osqp are built on shared libraries; by the design of osqp, these have a different…
-
Hi,
Thanks for sharing CVXPYGEN. I am able to install the same and generate code seamlessly on my Laptop. I am having a doubt regarding its architecture specific compilation and portability in l…
-
When I trun dcpg_data.py it gives thousands of warnings "dcpg_data.py:152: UserWarning: No CpG site at position 47655381! "
I think the reason is that those CpG sites are on the negative strand. I…
-
Hi,
I'm wondering how the genetic variants on CpG sites are treated by aligned_bam_to_cpg_scores.
For example, when a diploid genome has a heterozygous SNP on a CpG site, how will the coverage and…
-
Hi!
Sorry to bother you. I encountered an error when trying to run train_graph_cpg.py. The command I used is as follows:
```
python ${graphcpg}/model/train_graph_cpg.py --dataset_path ${graphcpg}/m…
-
We have identified some CpG sites associated with disease condition, could you please help how I can Identify SNPs associated with these sites using GoDMC resources? Is these any script/pipeline where…
-
Hello Alex,
I have a small question about RRBS methylation data.
It is my question that I post before.
My question this time is how to use RRBS methylation data to do a boxplot based on CpG s…
-
As per our discussion, we will define the molecular phenotype object of cpg site by a cis window around the TSS of each gene. However, one of the problems of this approach is how to handle the cpg sit…