-
The 3.0.0 / 3.0.1 release appears to have an undocumented breaking change. (If it was intentional, it isn't apparent from the ChangeLog). Our test suite started to fail despite no changes to this pa…
-
Gives `run_dragen_somatic_step` instead of `workflow.cwl#dragen-somatic-with-germline-pipeline--4.2.4/run_dragen_somatic_step`
-
as mention in the [cerise specialization documentation](http://cerise.readthedocs.io/en/develop/specialising.html), `cerise-client` uses [cwltiny](https://github.com/MD-Studio/cerise/blob/8006176fcf72…
-
We could provide a visual rendering of process Application Package and workflows using these tools.
Directly with `cwltool`!
https://github.com/common-workflow-language/cwltool/commit/cbc33f3ee9…
-
In the requirements, we need to add `InlineJavascriptRequirement`. This line causes cwltool to fail:
https://github.com/genome/analysis-workflows/blob/43c790e2ee6a0f3f42e40fb4d9a9005eb8de747a/definit…
-
**Describe the bug**
Linux quick start instructions working, but may have issues on Mac.
Take a look and see if reproducible
If it helps, the Ubuntu command-history and versions that worked were
``…
-
https://podman-desktop.io/docs/Installation
Probably will have to wait until `cwltool` autodetects podman: https://github.com/common-workflow-language/cwltool/issues/1344
mr-c updated
3 months ago
-
Scrape cwltool --debug stderr logs for a step to pull out a given component
-
I was working on another issue and discovered that the example input YAML I was using was outdated and the workflow I was running could be run with Cromwell but not `cwltool`. Before putting out a ne…
-
When we provide the results of Calrissian jobs as a deliverable, we include a RO-Crate that reports provenance of the results produced by the execution the CWL workflow. The provenance report is creat…