-
Hi,
It appears that `get_pseudobulk` loses `.obs` columns when they contain NAs, even when they are unique for each sample ID.
Here's an example.
```python
import pertpy
import decoupler
ad…
-
Hi,
I have been facing this weird issue. Evrytime I run the run_ulm function, suddenly all my cores are used and the machine crashes.
This is the code I was trying to run from the CollecTRI packag…
-
https://decoupler-py.readthedocs.io/en/latest/index.html
-
**Feature description**
A fuse like item that deletes the connections and cables attacthed to it, but instead of disapearing it ejects in the way its facing.
**Feature purpose**
The fuse is good …
-
Hi, I have been using CollecTRI successfully until recently, when I started receiving the following error:
`decoupleR::get_collectri(organism="human" split_complexes=FALSE)`
> [2024-06-04 21:20:36…
-
Hello!
I was following this tutorial (https://saezlab.github.io/decoupleR/articles/pw_bk.html) for pathway activity inference. I have mouse data, so I tried:
`net [2024-08-06 17:16:45] [SUCCESS] …
-
Hi, I wanted to first and foremost express my appreciation for this fantastic package!
I am trying to apply the TF activity inference functions on my 10X scRNA-seq data. For reference, my dataset …
-
Art
- [ ] Retexture Capsule at 285px/mm
- [ ] Fix capsule rotation
- [ ] Toggleable window
- [ ] Finish parachute bay
- [ ] Make main parachutes with hinge animation
- [ ] Make drogue chutes
…
-
Hi, I am trying to please reviewers and provide benchmark statistics for individual TFs.
According to decoupler-py's 'read the docs' page, this should be possible using the argument by='source' in…
-
Hello,
I am trying to run decoupleR but have just encountered an error after updating to the most recent version today when using run_ulm or run_mlm:
```R
sample_acts