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sub-task of #2
- [ ] 5a. human DLPFC ATAC-seq CP vs. VZ (Geschwind Cell 2018; ATAC-seq)
- [ ] 5b. ROADMAP fetal brain chromatin states
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Having SCREW inside the NCBI-Hackathons space has been raising some issues. Although we have permission to rename it, we don't have the ability to grant permissions to third-party tools (e.g. draw.io)…
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Top 3 candidates as determined by RICE modeling were:
1. Model organisms
2. Epigenomics
3. Antibody detection of protein abundance
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This issue aims to collect all the databases helpful to connect genome sequences to diseases.
- [ ] COSMIC
- [ ] ENCODE
- [ ] Roadmap Epigenomics
- [ ] HGMD
- [ ] KEGG
- [ ] GEO
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http://epigenomics.sdsc.edu:8000/nextseq/199/
QY_395 - QY_398
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From Epigenomics Forum, posted by Vinícius Daguano Gastaldi
Dear all,
I'm trying to use the estimateCellCounts() function with the FlowSorted.CordBlood.450k package. However, I keep having the …
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## nf-core
nf-core produces pipelines with gold standard tools for various analyses.
- Workflow manager using `nextflow` language.
- Compatible with SLURM
- Uses Docker, Singularity and conda t…
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http://epigenomics.sdsc.edu:8000/setqc/MM_128_1_2/web_summary.html
- now need login
- but login redircted to the default pages after login
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Comparing with metadata app. http://epigenomics.sdsc.edu:8000/metadata/index/
- there are `6,074` items in sequencing, but loading still very fast.
- Something there we can optimize.
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Some courses have changed names: BINF-F402 went from "Genomics, proteomics, evolution" to "Genomics, transcriptomics and epigenomics". BIOL-F208 went from "Biologie moleculaire et cellulaire" to "Bioc…