chanzuckerberg single-cell issues

chanzuckerberg / single-cell

A collection of documents that reflect various design decisions that have been made for the cellxgene project.

MIT License

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issues

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Curators can revise or submit schema 5.3.0 datasets

#709 brianraymor opened 5 hours ago
0
Curators can validate schema 5.3.0 datasets

#708 brianraymor opened 5 hours ago
0
Schema 5.3.0: Address priority requests from curators and computational biologists

#707 brianraymor opened 5 hours ago
0
Discovery for multiple species

#706 brianraymor opened 1 month ago
0
Schema 5.2.0: Address priority requests from curators and computational biologists

#705 brianraymor opened 1 month ago
0
CELLxGENE dataset schema 5.3.0 is reviewed and published.

#704 brianraymor opened 3 months ago
0
test

#703 Bento007 closed 4 months ago
1
spike: support validation with dependencies

#693 Bento007 closed 5 months ago
3
Downstream consumers can perform 5.1.0 post-migration operations

#692 brianraymor closed 2 months ago
1
Surface curated list associated with schema version in python API

#691 nayib-jose-gloria closed 6 months ago
1
Resolve data limit on output passed in the error reporting step of SFN

#690 joyceyan closed 5 months ago
12
Change the #cellgene-users Slack links to CZI Slack Community

#689 ebezzi closed 4 months ago
0
Run prod migration for schema 5.0.0

#688 joyceyan closed 6 months ago
0
Allow publishing denylist to mass revision publish batch job

#687 joyceyan closed 6 months ago
0
Persist increase to memory in terraform

#686 joyceyan closed 6 months ago
2
Delete empty uns dict keys

#684 danieljhegeman closed 6 months ago
2
Update schema migration script to report error messages if schema version isn't bumped

#681 joyceyan closed 7 months ago
0
Fix issue with too many batch jobs at once

#680 joyceyan closed 6 months ago
0
Verify that the dev migration worked as expected

#679 joyceyan closed 6 months ago
1
Ensure that we can run a schema migration that is robust to deploys to that environment

#678 joyceyan closed 6 months ago
4
Configure dev SFN to use map state in distributed mode

#660 joyceyan closed 7 months ago
0
Run dp-dev-devstack-schema-migration-sfn SFN in dev

#662 joyceyan closed 6 months ago
0
Mirror data from prod to dev

#661 joyceyan closed 7 months ago
0
Run dev migration for schema 5.0.0

#663 joyceyan closed 6 months ago
0
Schema 5.0.0 migration ops

#664 joyceyan closed 6 months ago
1
Update cellguide version to 5.0

#658 joyceyan closed 6 months ago
1
feat(Data Release): Setup testing

#655 Bento007 closed 7 months ago
1
feat(repo): Setup formatters and linters for repo

#653 Bento007 closed 7 months ago
0
feat(repo): Create new repo for cellxgene-ontology

#652 Bento007 closed 7 months ago
0
Curators can revise or submit schema 5.2.0 datasets

#651 brianraymor opened 7 months ago
0
Curators can validate schema 5.2.0 datasets

#650 brianraymor closed 5 hours ago
0
CELLxGENE dataset schema 5.2.0 is reviewed and published.

#649 brianraymor opened 7 months ago
0
Curators can revise or submit schema 5.1.0 datasets

#648 brianraymor closed 3 months ago
0
Find and resolve all usages of/references to CL:0000003 and/or "native cell" across all repos

#647 danieljhegeman closed 6 months ago
19
Identify which existing methods are available in the ecosystem which may meet our requirements

#646 sidneymbell opened 7 months ago
0
Define internal requirements for cell type reannotation pipeline

#645 sidneymbell closed 5 months ago
0
Census wants gene annotations to reflect the most up to date biological concepts

#643 metakuni closed 5 months ago
0
[Delivery] As a data submitter, data consumer, or CELLxGENE experience, I want the Data Platform to support visium and slide-seq experiments

#641 brianraymor closed 1 month ago
0
[Discovery] As a data submitter, data consumer, or CELLxGENE experience, I want the Data Platform to support visium and slide-seq experiments

#640 brianraymor closed 6 months ago
0
[Delivery] As a Data Consumer, I want ontology modeling to be consistent across CELLxGENE experiences and to be accessible to me to reproduce in my own code.

#639 brianraymor closed 4 months ago
1
Curator workflow for dataset schema migrations is further improved

#638 metakuni closed 8 months ago
0
Provide prioritized proposals for API and documentation design improvements to improve usability of Census

#635 pablo-gar opened 8 months ago
0
Census enables users to perform in silico experimentation

#637 pablo-gar closed 4 months ago
1
Computational biologists can identify the most similar Census cells to their own data for downstream analysis, e.g. cell annotation, in silico perturbation, and quality control.

#636 pablo-gar opened 8 months ago
1
[CONT'D] Computational biologists can download cross-dataset slices of Visium and slide-seq data for downstream analysis, in particular for their use on data modeling

#644 pablo-gar opened 8 months ago
0
[Comp bio exploration] Generate Census level cell type annotation: Phase I

#634 BAevermann opened 9 months ago
0
Deliver on partnership with CL

#633 BAevermann opened 9 months ago
1
Devise policy for private collections

#632 BAevermann closed 2 months ago
2
Provide logistics to HCA that make clear CxGs requirements for participation

#631 BAevermann closed 2 months ago
2
Devise and help implement data ingestion framework for BioNetworks

#630 BAevermann closed 2 months ago
0