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chanzuckerberg
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single-cell
A collection of documents that reflect various design decisions that have been made for the cellxgene project.
MIT License
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Update and review RICE model
#629
BAevermann
opened
9 months ago
1
Perform landscaping for top 3 candidates for support in CELLxGENE
#628
BAevermann
opened
9 months ago
1
Increase the number cell types that meet the momentum target metric
#627
BAevermann
closed
2 months ago
1
Increase number of tissues that meet donor momentum target
#626
BAevermann
closed
2 months ago
1
Curators can revise or submit schema 5.0.0 datasets
#625
brianraymor
closed
6 months ago
0
Curators can validate schema 5.1.0 datasets
#624
brianraymor
closed
4 months ago
0
CELLxGENE dataset schema 5.1.0 is reviewed and published.
#623
brianraymor
closed
2 months ago
0
[Discovery] Incorporate genetic ancestry in the Census to model the highest level of biological variability
#622
brianraymor
opened
9 months ago
1
Curators can validate schema 5.0.0 datasets
#618
brianraymor
closed
6 months ago
0
CELLxGENE dataset schema 5.0.0 is reviewed and published.
#617
brianraymor
closed
6 months ago
0
References to obsolete native cell must be addressed
#611
brianraymor
closed
6 months ago
2
[Discovery] Curators want collection revisions to be automated to increase their velocity
#610
brianraymor
closed
5 months ago
5
TEST IGNORE ME
#609
metakuni
closed
11 months ago
0
Embed notebooks into census read the docs + update link in spotlight/directory to link to the embedding
#607
dsadgat
closed
4 months ago
0
feat: create a notebook showing how to do zero-shot projection of cells in GeneFormer embedding
#604
atarashansky
closed
9 months ago
0
feat: create a notebook showing how to do zero-shot projection of cells in SCVI embedding
#603
atarashansky
closed
9 months ago
0
feat: create a notebook illustrating the clean clustering of extremely rare cell types in GeneFormer embedding
#602
atarashansky
closed
9 months ago
0
feat: create a notebook illustrating the clean clustering of extremely rare cell types in SCVI embedding
#601
atarashansky
closed
9 months ago
0
feat: create a notebook displaying UMAP of GeneFormer embedding
#600
atarashansky
closed
9 months ago
0
feat: create a notebook displaying UMAP of SCVI embedding
#599
atarashansky
closed
9 months ago
0
Create Marketing Plan
#598
dsadgat
closed
11 months ago
1
[Discovery] Curators want to be notified when the DOI metadata for a collection is updated or corrected on Crossref
#642
brianraymor
closed
5 months ago
4
feat(schema-4): observation_joinid should not appear in explorer's "Author Category" filter
#597
prathapsridharan
closed
11 months ago
0
feat(schema4): WMG frontend should be updated to handle multiethnic terms
#596
joyceyan
closed
10 months ago
7
Submission process for CZI Hosted Projects (formerly Tier 2) and Community Projects (formerly Tier 3)
#593
pablo-gar
closed
4 months ago
1
How-to contribute for CZI Hosted Projects (formerly Tier 2) and Community Projects (formerly Tier 3)
#592
pablo-gar
closed
4 months ago
0
Project-specific notebooks for CZI Hosted Projects (formerly Tier 2) and CZI Maintained Projects (formerly Tier 1) are embedded in the site
#591
pablo-gar
closed
9 months ago
3
CZI Hosted Projects (formerly Tier 2) embeddings are accessible for use.
#590
pablo-gar
closed
4 months ago
0
Per-tier detailed information about the tier and the associated projects.
#589
pablo-gar
closed
10 months ago
1
A landing site (cave entrance) providing a high-level overview of all tiers
#588
pablo-gar
closed
4 months ago
0
CELLxGENE Discover Census data integration directory
#587
pablo-gar
closed
4 months ago
0
Ancestry Prediction: Generate BAM and VCF for all possible donors in Census
#586
chouellaine
opened
11 months ago
0
Geneformer embeddings and models are incorporated into Census
#585
pablo-gar
closed
8 months ago
1
Update GHAs that trigger schema migration to pass auto-publish flag
#584
nayib-jose-gloria
closed
11 months ago
1
Update e2e + functional tests and rdev to use valid 4.0.0 datasets
#583
nayib-jose-gloria
closed
11 months ago
0
Load dataset into memory during validation when adding labels.
#581
Bento007
closed
1 year ago
1
Create 'Metadata-Update' AWS Infra
#580
nayib-jose-gloria
closed
9 months ago
3
Annotate and Persist 'Citation' field
#579
nayib-jose-gloria
closed
11 months ago
0
Persist tissue_type in data portal DB, DP API, and Discover API
#578
nayib-jose-gloria
closed
11 months ago
0
Migrate script for schema 4 changes
#576
nayib-jose-gloria
closed
10 months ago
0
Use published DOI rather than preprint where exists
#575
nayib-jose-gloria
closed
8 months ago
8
Update cellxgene-schema schema-definition yaml to 4.0.0
#574
nayib-jose-gloria
closed
1 year ago
0
Convert Minor Schema Update GHA workflows to be manually dispatched
#573
nayib-jose-gloria
closed
1 year ago
1
Create Major Schema Update GHA workflow
#572
nayib-jose-gloria
closed
11 months ago
0
Create manual, isolated 'bulk publish' AWS job to publish all active revisions
#571
nayib-jose-gloria
closed
11 months ago
4
Do NOT auto-publish during schema migration batch job if running a major schema update
#570
nayib-jose-gloria
closed
11 months ago
0
Update Migration Automation to be compatible with Major Schema Updates
#569
nayib-jose-gloria
closed
9 months ago
0
Data consumers can find collections and datasets submitted by a consortium
#568
brianraymor
closed
11 months ago
0
CELLxGENE experiences may perform schema 4 post-migration tasks
#567
brianraymor
closed
8 months ago
0
Account for Expiring super curator machine account API Keys for Curator Report Generator GHA
#566
nayib-jose-gloria
closed
8 months ago
0
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