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chanzuckerberg
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single-cell
A collection of documents that reflect various design decisions that have been made for the cellxgene project.
MIT License
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Create 'Metadata-Update' AWS Infra
#580
nayib-jose-gloria
closed
11 months ago
3
Annotate and Persist 'Citation' field
#579
nayib-jose-gloria
closed
1 year ago
0
Persist tissue_type in data portal DB, DP API, and Discover API
#578
nayib-jose-gloria
closed
1 year ago
0
Migrate script for schema 4 changes
#576
nayib-jose-gloria
closed
11 months ago
0
Use published DOI rather than preprint where exists
#575
nayib-jose-gloria
closed
10 months ago
8
Update cellxgene-schema schema-definition yaml to 4.0.0
#574
nayib-jose-gloria
closed
1 year ago
0
Convert Minor Schema Update GHA workflows to be manually dispatched
#573
nayib-jose-gloria
closed
1 year ago
1
Create Major Schema Update GHA workflow
#572
nayib-jose-gloria
closed
1 year ago
0
Create manual, isolated 'bulk publish' AWS job to publish all active revisions
#571
nayib-jose-gloria
closed
1 year ago
4
Do NOT auto-publish during schema migration batch job if running a major schema update
#570
nayib-jose-gloria
closed
1 year ago
0
Update Migration Automation to be compatible with Major Schema Updates
#569
nayib-jose-gloria
closed
11 months ago
0
Data consumers can find collections and datasets submitted by a consortium
#568
brianraymor
closed
1 year ago
0
CELLxGENE experiences may perform schema 4 post-migration tasks
#567
brianraymor
closed
9 months ago
0
Account for Expiring super curator machine account API Keys for Curator Report Generator GHA
#566
nayib-jose-gloria
closed
10 months ago
0
Inventory AWS resources in dev account for pen test
#565
atolopko-czi
closed
1 year ago
1
Edit the CELLxGENE Discover publication and product documentation to include findings
#564
anaistrate
closed
1 year ago
0
Incorporate External Feedback into research plan
#563
anaistrate
closed
1 year ago
0
Propose cellxgene-schema-cli QA process + add to PR Template
#562
nayib-jose-gloria
closed
1 year ago
0
fix: override default so that issues are not marked as stale
#561
maniarathi
closed
1 year ago
0
bug: Github Action to mark PRs as stale also marks issues as stale
#560
maniarathi
closed
1 year ago
0
Fix JSON Serialization Error in publish_and_cleanup when reporting DatasetUploadStatus
#559
nayib-jose-gloria
closed
1 year ago
7
Only Report Prod Schema Migrations in Curator-Reports Slack Channel
#558
nayib-jose-gloria
closed
1 year ago
1
feat: Add a Github Action that automatically closes stale PRs.
#557
maniarathi
closed
1 year ago
0
Replace author filter with a publication filter
#556
MillenniumFalconMechanic
closed
1 year ago
1
Productionalize Frontend Filter Compute Scripts
#555
nayib-jose-gloria
closed
6 months ago
11
Account for required branch protections when pushing automated filter commits in single-cell-data-portal
#554
nayib-jose-gloria
closed
1 year ago
0
Create major schema migration update GHAs
#553
nayib-jose-gloria
closed
1 year ago
1
Update ‘publish’ schema_migration step function step to NOT auto-publish if migration is of a major schema upgrade.
#552
nayib-jose-gloria
closed
1 year ago
1
Add a standalone batch job to bulk publish the whole corpus or subsets of the corpus
#551
nayib-jose-gloria
closed
1 year ago
1
Skip lint checks on migration automated PR
#549
nayib-jose-gloria
closed
1 year ago
1
Automatically update CHANGELOG as part of ontology bumps and migrate PRs
#548
nayib-jose-gloria
closed
1 year ago
1
Account for lag between publishing to PyPI and pip install fetching new version before triggering processing image rebuild
#547
nayib-jose-gloria
closed
7 months ago
1
In prep for a schema migration, only bump schema version in cellxgene-schema CLI as part of an automated PR
#545
nayib-jose-gloria
closed
7 months ago
2
Migration Automation Workflow Improvements
#544
nayib-jose-gloria
opened
1 year ago
0
Update Migration and Processing Jobs to Provision Resources based on Dataset Requirements
#543
nayib-jose-gloria
closed
11 months ago
5
Schema Migration Batch Job Improvements
#542
nayib-jose-gloria
closed
11 months ago
0
Data Platform changes required to support slide-seq experiments
#541
brianraymor
closed
9 months ago
0
Bug: cellxgene-schema validate still requires uns['schema_version'] to be populated
#540
nayib-jose-gloria
closed
1 year ago
1
Exploratory work for gradual mypy adoption
#539
joyceyan
closed
1 year ago
0
Incorporate Internal Feedback on the Research Plan
#538
anaistrate
closed
1 year ago
0
Get Feedback on Research Plan from KOL in PTDrafts
#537
anaistrate
closed
1 year ago
0
Get Feedback on Research Plan Internally
#536
anaistrate
closed
1 year ago
0
Sidney and Ana divide up the work
#535
anaistrate
closed
1 year ago
0
WIP: dry run for modified labels.
#534
Bento007
closed
6 months ago
2
feat(schema4): update ontology_term_label function in ontology_labels.py to appropriately handle multi-value strings
#528
atarashansky
closed
1 year ago
1
feat(schema4): remove redundant code for dealing with root CL terms
#527
atarashansky
closed
9 months ago
4
feat(schema4): update WMG pipeline to exclude non-tissue "tissue_type" cells from the generated cubes
#526
atarashansky
closed
1 year ago
2
feat(schema4): remove suffix logic in ontology_term_label function in ontology_labels.py
#525
atarashansky
closed
10 months ago
3
Establish reporting framework with grantee
#524
BAevermann
closed
1 year ago
1
Get CL partnership grant submitted and approved
#523
BAevermann
closed
1 year ago
1
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