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Hi,
I'm curious if it is possible to use fastq files with reads from whole exome target-capture raw sequencing?
Thanks
Vinny
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A user wrote in asking about the allele numbers (AN) for this [variant](https://gnomad.broadinstitute.org/variant/3-10052405-G-A?dataset=gnomad_r4). I realized from their question that the non-UKB A…
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### What you did:
I looked at the GnomAD 4.1 data for variant chr2:79195912-G-T
https://gnomad.broadinstitute.org/variant/2-79195912-G-T?dataset=gnomad_r4
### What happened:
The foot of the …
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**Describe the bug**
Dear bamtocov team,
I have human WES data and am trying to run bamtocov. After 6 hours, not even half is done/calculated, even when using 24 threads. Maybe I am missing somet…
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I believe the read depth chart is currently calculating the average coverage over the entire genome. This will yield a very small Y axis, so even if you zoom into an area where you know there's covera…
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Recently Paul (VCGS) flagged that Mito variants are coming through into Exome AIP reports
The final line of `gs://cpg-common-main/references/hg38/v0/exome_calling_regions.v1.interval_list`
is `chr…
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## Describe the issue
Hi,
We are currently using the G2P plugin based on the the global MAF in the locally downloaded gnomAD variants (`gnomADg_r3.1.1_GRCh38` and `gnomADe_r2.1.1_GRCh38`).
The…
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#### What data file(s) does this issue pertain to?
histologies.tsv
#### What release are you using?
v15
#### Put your question or report your issue here.
For `RNA_library`, the histol…
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Placeholder ticket with some notes:
```
Seqr-Sample-QC
Sequencing metrics
if it's exome and external
Platform Level Computation
For exome samples
coverage stats, figure out which pl…