BD2KGenomics cgl-docker-lib issues

BD2KGenomics / cgl-docker-lib

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Update Mango to Spark 2.4.3

#292 akmorrow13 closed 5 years ago
19
Update client to v1.4

#291 jvivian opened 5 years ago
0
Update gdc-client to 1.4

#290 jvivian opened 5 years ago
0
updated Mango python version to py35

#289 akmorrow13 closed 5 years ago
3
updated Gencode v23 to v24 for bamQC

#288 akmorrow13 closed 5 years ago
7
BamQC Makefile fails with unknown -f flag

#287 akmorrow13 closed 5 years ago
1
Human_Homo_sapiens/hg38_GENCODE_v23_basic.bed.gz does not exist for BamQC

#286 akmorrow13 closed 5 years ago
2
updated Mango for Spark 2.3.2

#285 akmorrow13 closed 5 years ago
8
Add Treehouse bamQC (resolves #283)

#284 jvivian closed 5 years ago
0
Add BamQC

#283 jvivian closed 5 years ago
0
Update CutAdapt to 1.18

#282 jvivian closed 5 years ago
0
Update CutAdapt to 1.18

#281 jvivian closed 5 years ago
0
Fix ZeroDivisionError when no genes map (resolves #279)

#280 jvivian closed 6 years ago
0
`gencode_hugo_mapping` fails on non-human genes

#279 jvivian closed 6 years ago
0
issues/277 updated samtools version

#278 tpesout closed 6 years ago
0
update samtools to 1.8

#277 tpesout closed 6 years ago
0
Flappy Jenkins test

#276 jvivian opened 6 years ago
0
Add GDC client (resolves #274)

#275 jvivian closed 6 years ago
0
Add GDC-Client

#274 jvivian closed 6 years ago
0
remove spark and scala version scripts for Mango

#273 akmorrow13 closed 6 years ago
11
Open Source License

#272 Georgehe4 opened 6 years ago
0
Update docker commands for Mango

#271 Georgehe4 opened 6 years ago
0
Mango not available on https://quay.io/organization/ucsc_cgl

#270 akmorrow13 closed 6 years ago
4
Add bigdatagenomics Mango container

#269 akmorrow13 closed 6 years ago
18
Fix hera_build import bug (resolves #267)

#268 jvivian closed 6 years ago
1
Fix bug in Hera's index build

#267 jvivian closed 6 years ago
0
Bump to DECA 0.1.0 (resolves #265)

#266 fnothaft closed 7 years ago
1
Update DECA container to 0.1.0 release

#265 fnothaft closed 7 years ago
0
Issues/263 create rtgtools image

#264 tpesout closed 7 years ago
1
need rtg-tools container

#263 tpesout opened 7 years ago
0
Update to latest (1.0dev100) release of snap (resolves #261)

#262 fnothaft closed 5 years ago
1
Upgrade SNAP to 1.0dev.100

#261 fnothaft opened 7 years ago
0
Add retry to `docker push` in jenkins

#260 jvivian opened 7 years ago
1
Issues/258 add python to hera

#259 jvivian closed 7 years ago
2
Add python to Hera

#258 jvivian closed 7 years ago
0
Bump Hadoop containers to Apache Hadoop 2.7 (resolves #256)

#257 fnothaft closed 7 years ago
1
Bump to Apache Hadoop 2.7

#256 fnothaft closed 7 years ago
0
Add cmake (resolves #254)

#255 jvivian closed 7 years ago
4
Make CMAKE base image

#254 jvivian closed 7 years ago
0
Add Hera (resolves #252)

#253 jvivian closed 7 years ago
5
Add Hera

#252 jvivian closed 7 years ago
0
Add DECA CNV caller (resolves #250)

#251 fnothaft closed 7 years ago
2
Add DECA

#250 fnothaft closed 7 years ago
0
Add pizzly (resolves #248)

#249 jvivian closed 7 years ago
0
Add pizzly

#248 jvivian closed 7 years ago
0
latest does not exist

#247 antonkulaga opened 7 years ago
1
Update STAR (resolves #245)

#246 jvivian closed 7 years ago
2
Update STAR to 2.5.3a

#245 jvivian closed 7 years ago
0
Refactor `spark-and-maven` on `apache-spark-common`

#244 fnothaft opened 7 years ago
0
Factor apt-get commands out

#243 fnothaft opened 7 years ago
2