issues
search
BD2KGenomics
/
cgl-docker-lib
21
stars
20
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
command for dockerized rna-seq 3.2.1 - multiple samples using fastq for input
#242
hbeale
opened
7 years ago
0
ADAM recompute updates (resolves #201)
#241
fnothaft
closed
7 years ago
4
Make DESeq2 Container
#240
jvivian
closed
7 years ago
1
Fix kallisto tagging in makefile (resolves #238)
#239
jvivian
closed
7 years ago
0
Correct kallisto makefile so it pushes to quay
#238
jvivian
closed
7 years ago
0
Update Kallisto to 0.43.1 (resolves #236)
#237
jvivian
closed
7 years ago
0
Update kallisto to 0.43.1
#236
jvivian
closed
7 years ago
0
Issues/232 update bwakit (resolves #232)
#235
tpesout
closed
7 years ago
0
223: added java_opts to docker call
#234
tpesout
closed
7 years ago
0
picardtools needs to specify JAVA_OPTS when invoked
#233
tpesout
opened
7 years ago
0
need upgraded bwakit image
#232
tpesout
closed
7 years ago
0
upgrade gatk version (resolves #229)
#231
tpesout
closed
7 years ago
1
upgrade picard version (resolves #228)
#230
tpesout
closed
7 years ago
1
upgrade version of gatk
#229
tpesout
closed
7 years ago
0
upgrade version of picardtools
#228
tpesout
closed
7 years ago
0
Extend kallisto image with single cell code (resolves #226)
#227
tpesout
closed
7 years ago
0
Add an extension of the kallisto image for single cell work
#226
tpesout
closed
7 years ago
0
Update Kallisto to 0.43.0 (resolves #224)
#225
tpesout
closed
7 years ago
2
need new kallisto version for rnaseq single cell
#224
tpesout
closed
7 years ago
0
Add hugo mapping (resolves #219)
#223
jvivian
closed
7 years ago
3
Add rsem postprocess (resolves #218)
#222
jvivian
closed
7 years ago
1
Update fastq-dump to 2.8.1 (resolves #220)
#221
jvivian
closed
7 years ago
1
Update fastq-dump
#220
jvivian
closed
7 years ago
0
Add gencode_hugo_mapping
#219
jvivian
closed
7 years ago
0
Add rsem_postprocess
#218
jvivian
closed
7 years ago
0
gencode_hugo_mapping docs
#217
cchng
closed
7 years ago
4
Add Alex's protect implementation
#216
natanlao
closed
6 years ago
3
Zero length bam files
#215
rcurrie
closed
7 years ago
10
Update RNA-seq to 3.0.0
#214
cket
closed
7 years ago
6
Fix submodule build in vg image. Updated vg to v1.4.0-1744-gea8edfd
#213
cmarkello
closed
7 years ago
4
Log failed tools in jenkins.py and exit if a build failed (resolves #211)
#212
fnothaft
closed
7 years ago
20
Fix jenkins.py so that failing builds fail the build
#211
fnothaft
closed
7 years ago
0
Fixed vg image build issue
#210
cmarkello
closed
7 years ago
5
Cw lfixes
#209
wshands
closed
7 years ago
0
Updated vg image to v1.4.0-1649-g8a28f7d
#208
cmarkello
closed
7 years ago
4
Update vg image to version v1.4.0-1744-gea8edfd
#207
cmarkello
closed
7 years ago
8
Created new JSON and CWL files and updated docker version to 1.12
#206
wshands
closed
7 years ago
0
Remove patch that added -M option to bwakit
#205
jpfeil
opened
7 years ago
0
Add -M option to run-bwamem
#204
jpfeil
closed
7 years ago
2
Add -M option to run-bwamem
#203
jpfeil
opened
7 years ago
0
ADAM recompute upgrades (resolves #201)
#202
fnothaft
closed
7 years ago
1
Misc upgrades for ADAM recompute
#201
fnothaft
closed
7 years ago
0
Build cleanup to try and (resolves #199)
#200
fnothaft
closed
7 years ago
4
Spark containers don't seem to get pushed to quay
#199
fnothaft
closed
7 years ago
2
Invoking tabix and bgzip
#198
adamnovak
opened
7 years ago
0
Template Apache Spark containers for cross building (resolves #196)
#197
fnothaft
closed
7 years ago
6
Cross build spark versions
#196
fnothaft
opened
8 years ago
0
Migrate rsem and hugo containers
#195
jvivian
closed
7 years ago
2
Update quinine docker image to pull in cloud pilot fixes (resolves #193)
#194
fnothaft
closed
8 years ago
0
Update quinine dockerfile
#193
fnothaft
closed
8 years ago
0
Previous
Next