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BD2KGenomics
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cgl-docker-lib
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Fix Docker tags (resolves #189)
#192
jvivian
closed
7 years ago
2
Pipeline image labels are wasteful and misleading
#191
hannes-ucsc
opened
8 years ago
0
Issues/189 fix require error
#190
jvivian
closed
8 years ago
0
rnaseq-cgl container does not recognize input
#189
Jeltje
closed
7 years ago
6
Add s3am
#188
cket
closed
8 years ago
2
Manually build Spark 1.5 with jodatime 2.9.4
#187
almussel
closed
8 years ago
5
Bump Java version in hadoop-common
#186
almussel
closed
8 years ago
4
Skip non cgl-docker-lib tools (resolves #184)
#185
jvivian
closed
8 years ago
3
Patch jenkins.py to avoid valueError
#184
jvivian
closed
8 years ago
0
Docker pipelines for exome var, bwa alignment
#183
alex-hancock
closed
5 years ago
10
Added dockerized pipelines files for exome var and bwa alignment
#182
alex-hancock
closed
8 years ago
0
Added folders, files for dockerized pipelines: bwa alignment and exome var
#181
alex-hancock
closed
8 years ago
0
Alex dockerized pipelines
#180
alex-hancock
closed
8 years ago
0
Increase Docker cache hits during build
#179
hannes-ucsc
opened
8 years ago
0
Create a test image for spooky tests (resolves #177)
#178
arkal
closed
8 years ago
8
Create image for spooky tests
#177
arkal
closed
8 years ago
0
Add toil appliance containers (resolves #159)
#176
cket
closed
8 years ago
3
Backup images from quay.io to S3
#175
hannes-ucsc
opened
8 years ago
0
Delete unused containers (resolves #173)
#174
fnothaft
closed
7 years ago
8
Delete unused containers
#173
fnothaft
closed
7 years ago
13
Tag bwakit:latest after building (resolves #171)
#172
fnothaft
closed
8 years ago
3
bwakit doesn't get tagged with latest on push
#171
fnothaft
closed
8 years ago
0
Refactor wrapper functionality out of cgl-docker-lib
#170
nsjake
opened
8 years ago
0
Add R to GATK container
#169
jpfeil
opened
8 years ago
1
Consolidate everything down to the Makefile and use of sed commands.
#168
fnothaft
closed
8 years ago
1
Consider retaining the STAR log in rnaseq-cgl-pipeline
#167
hbeale
opened
8 years ago
2
Updated vg to version v1.4.0-1099-g9aa20df
#166
cmarkello
closed
8 years ago
5
RNA seq cgl wrapper gives incorrect error message
#165
nsjake
closed
8 years ago
1
Updated vg to version v1.4.0-1097-g1ab01ef
#164
cmarkello
closed
8 years ago
3
Make oncotator container
#163
jpfeil
opened
8 years ago
0
Explore valid networking modes for toil-appliance containers
#162
fnothaft
opened
8 years ago
1
Clean up build
#161
fnothaft
opened
8 years ago
1
Add containers for Toil appliance (resolves #159)
#160
fnothaft
closed
8 years ago
13
Toil docker appliance
#159
fnothaft
closed
8 years ago
0
Point at Quinine fixes for issues 34/35 (resolves #157)
#158
fnothaft
closed
8 years ago
1
Yet more Quinine hotfixes
#157
fnothaft
closed
8 years ago
0
Update quinine with hotfixes (resolves #155)
#156
fnothaft
closed
8 years ago
1
Bump Quinine with hotfixes
#155
fnothaft
closed
8 years ago
1
Modifications/cleanup to @boconnor's WDL/adam-pipeline PR
#154
fnothaft
closed
8 years ago
2
Adding a WDL demo
#153
briandoconnor
closed
8 years ago
9
Modified adam-pipeline to pass default memory (resolves #151)
#152
fnothaft
closed
8 years ago
0
adam-pipeline container restricts user to <2GB RAM
#151
fnothaft
closed
8 years ago
2
Add Quinine container (resolves #146, #149)
#150
fnothaft
closed
8 years ago
3
Add quinine/QC container
#149
fnothaft
closed
8 years ago
0
Revised mono-docker ADAM pipeline to not depend on Docker socket (resolves #147)
#148
fnothaft
closed
8 years ago
0
Revise adam-pipeline container to not need Docker socket
#147
fnothaft
closed
8 years ago
1
ADAM build fails due to not pushing spark-and-maven container
#146
fnothaft
closed
8 years ago
3
Bump to ADAM 0.20.0 release candidate (resolves #144)
#145
fnothaft
closed
8 years ago
0
Update ADAM docker container to 0.20.0 RC
#144
fnothaft
closed
8 years ago
0
Update RNAseq container for 2.0.0
#143
jvivian
closed
8 years ago
0
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