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Stuff/Links to fix after renaming:
* [x] GTN Material https://github.com/galaxyproject/training-material/pull/5072
* [x] Research Software Ecosystem (RSEc) CI https://github.com/research-software-e…
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One of the Kraken2 indexes is an exact duplicate of another, instead of containing the actual distinct data.
So -- this needs a new index to be created (or found?), and replaced over the existing i…
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1. The site renders fine for me on Firefox but has not rendered all day for me on Safari
https://training.galaxyproject.org/training-material/feeds/index.html
2. Can we distinguish types of reso…
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It's dokku, we need to follow dokku's deployment guide
The absolute bare minimum is a procfile, e.g. https://github.com/galaxyproject/ptdk/blob/main/Procfile
and then we setup the git remote to pu…
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There are at least several tools which nicely show up on the [web site](https://galaxyproject.github.io/galaxy_codex/), but are neither included in [all_tools.json](https://raw.githubusercontent.com/g…
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Hi!
First of all sorry for bothering you on this channel but I don't find any opportunity to contact you on mercurial repository.
I would like to ask if there is a possibility to get the seqprep t…
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The galaxyproject.org [Global Hub](https://nstoler.com/img/posters/2022-GCC.png) project is nearly ready for launch. The galaxyproject.eu [homepage](https://galaxyproject.org/eu/), its [news](https://…
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I think a further improvement, for all Galaxy training slides in general, would be to implement some kind of automatically built (optional) progress bar in the footer, like this example (courtes of h…
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The --augustus_species parameter in Funannotate appears to be for reusing Augustus training sets from previous runs of Funannotate. I'm not sure if this data is kept from one run to the next (the comm…
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There is a bug in ampvis2 that brakes the wrapper if specific taxa should be shown.
It errors with:
```
Error: unexpected symbol in:
"
showRemainingTaxa"
Execution halted
…