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Hello, I was trying to compile the bugfix 1.0.1 version on ubuntu 22.04. Towards the end of make it started with many of the following errors:
In file included from /public/software/dechat/DeChat-1…
melop updated
5 months ago
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* **PTHR ID & PTN node:**
PTN000385050 (PTHR15004)
* **Sequences with problematic annotation (ID + gene/protein name):**
Fly GatC (FBgn0064115)
Fly GatA (FBgn0260779)
Fly GatB (FBgn0039153)
…
sjm41 updated
3 months ago
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While trying to help a user to build kissplice (which depends on bcalm) on an ARM Mac, I encountered two build issues.
I managed to track them down and fix them using github actions CI, as I do not h…
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Hello,
I have a problem during installation.
These are my version of gcc and cmake :
I us…
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Dear GATB team,
In [pandora](https://github.com/rmcolq/pandora/), we use GATB to make a local assembly of de-novo variants. We are facing a performance issue where we have to perform several thousa…
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running:
`kmtricks pipeline --file fof2 --run-dir ./kmer_pa --kmer-size 31 --mode kmer:pa:text -t 10`
I get:
> Killed after receive Segmentation fault:SIGSEGV(11) signal
running 120 samples, …
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To support finding long k-mers, I tried re-installing in the build folder following instructions:
```
rm -Rf CMake* && cmake -DKSIZE_LIST="32 64 92" .. && make
```
where I chose multiples of 32,…
b2jia updated
3 years ago
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docker run -it --rm camoragaq/brumir:v2.0 bash -c "perl /opt/BrumiR/brumir.pl -a trimmed/small_8_R1_001.umi.fastq.gz -p brumir"
We can not find /opt/BrumiR/bin/bcalm
Do you download it? get the BCAL…
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Hi,
I'm trying to compile Gap2Seq. I'm stuck at the cmake stage. Apparently it doesnt find `ZLIBConfig.cmake` even though I think I manage to correctly compile ZLIB. In fact `ZLIBConfig.cmake` it's…
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There is a bug in the getDefaultProperties() function
https://github.com/GATB/gatb-core/blob/e0c9525d53ab0a8da9d07512858c826a98a12da0/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp#L402
If…
rizkg updated
6 years ago