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Hi,
I've encountered some differences when calculating the logicle transform using different methods. I had seen that flowutils matches the GatingML 2.0 spec, but I get differences when computing …
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**Is your feature request related to a problem? Please describe.**
FlowKit does not appear to use the matrix-inverted-already flag in GatingML
**Describe the solution you'd like**
It would be nic…
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In CytoBank (premium version as of July 7th, 2016), users can arbitrarily overlay gates defined in an experiment on any population, even if these gates are not defined under those populations and are …
ptvan updated
8 years ago
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Identify data sets that can be used for training of the automated cell population classifier. Potential source repositories are:
* FlowRepository: https://flowrepository.org
* Cytobank: https://ww…
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Hi all,
i was wondering if anybody worked with .iex files generated by Intellicyt (https://intellicyt.com/products/instrumentation/). The files are containers that have FCS3.0 format fcs files, gat…
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Hi,
I've been exploring FlowSOM and had a problem when exporting .xml. I've tried several ways:
- get the XML code from flowJo & saving it through a text document as .xml file
- importing it as .wsp…
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Has any testing been performed with .fcs files as generated by FCS Express. Specifically, should load_cytoset_from_fcs work as it does with FloJo .fcs files?
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When importing gatingML files, in constructTree, special characters in gate names (popName, thisGateName) are replaced with `:` when the node is added through addGate but this change is not reflected …
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I like how `CytoPy` includes matplotlib scales for the different normalizations that make the axes look like in e.g. FlowJo. I.e. instead of plotting normalized values, the raw valuese are plotted, bu…
grst updated
4 months ago
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When the scale settings in flowjo are adjusted (before or after drawing the gate) from a default of width argument = -100, the gate coordinates end up incorrect after transfer to Cytobank. This is to …