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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
Haplotype 1:
- Cercis/canadensis/genomes/ISC453364.gnm3.GWXB
- Cercis/canadensis/annotations/IS…
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Hello!
I have been using TOGA lately for transferring hg38 gene annotations to a newly constructed genome and it looks good so far! However, I do notice that annotations for non-coding RNAs such as…
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It would be very useful to have annotations for KEGG subsystems and genes assigned by the ModelPolisher. This would save a lot of time and work during model curation.
To obtain genes' annotations o…
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### Main steps for adding new genome and annotation collections
# Genus/species/collection names:
Haplotype 1:
- Chamaecrista/fasciculata/genomes/ISC494698.gnm1.8Q19
- Chamaecrista/fasciculata…
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* **PTHR ID & PTN node:**
arg4 | GO:0004151 | dihydroorotase activity | IBA with P27708 , MGI:1916969 , 1588606 , PTN000150227 , FBgn0003189
I think this is getting transferred because it ma…
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* **PTHR ID & PTN node:**
I have a few annotations for cyclosporin A binding from lots of sources. It seems odd since cyclosporin is a compound isolated from soil fungus and used as an immunosuppre…
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Hi there,
I was browsing around the zoonomia data portal and found this [link](https://cgl.gi.ucsc.edu/data/cactus/241-mammalian-2020v2-hub/documentation/zoonomiaGenes.html) saying that gene predic…
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1. [x] Migrate the total annotations graph from old stats to new stats - "Cumulative annotations by type and year"
2. [x] Remove genes and annotations per paper from old stats - "Annotations/genes fo…
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* **PTHR ID & PTN node:**
GO:0004042 | acetyl-CoA:L-glutamate N-acetyltransferase activity | IBA with S000004666 , PTN000559455
* **Sequences with problematic annotation (ID + gene/protein nam…
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- gene-disease annotations should be only for terms defined by the gene causing the disease (e.g ~type1; ...)
- these annotations should come from OMIM only
- the annotation should be brought in ONL…