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--Brian has implemented scripts to compute GRNs, score each cell for the activity of GRNs, created tSNE visualizations of these networks with Scanpy, which look very good, and calculated enrichment of…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/rhielab/TENET
Confirm the following by editing ea…
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when I try the Gene Regulatory Networks tutorial , the first step "results.ctl=compute.network(expr.data = expr.ctl,gene.names = gene.names)" reported an error:
Error: 'rowSort' is not an exported ob…
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**Background**
* [SBML](https://synonym.caltech.edu) and [CellML](https://www.cellml.org) are now widely adopted for defining and sharing models of subcellular biological processes.
* @MauriceHendri…
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Dear all,
Thank you for developing LINGER.
I am trying LINGER with different metacells inputs and I could successfully infer different cell population gene regulatory networks for each of them.
…
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>The rapid progress of gene expression profiling has facilitated the prosperity of recent biological studies in various fields, where gene expression data characterizes various cell conditions and reg…
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As in, e.g.
> Rämö P, Kesseli J, Yli-Harja O. Perturbation avalanches and criticality in gene regulatory networks. J Theor Biol. 2006;242: 164–170. doi:[10.1016/j.jtbi.2006.02.011](https://doi.org/…
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### Task motivation
Gene Regulatory Network (GRN) inference is pivotal in systems biology, offering profound insights into the complex mechanisms that govern gene expression and cellular behavior. Th…
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At the meeting last night, several people were interested in learning more about the biology underlying gene expression and RNA sequencing. The following links provide an introduction to these topics,…
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Hi,
I found the list missed some recent papers:
>[Multimodal Integration] [2022 Nature Biotechnology] Multi-omics single-cell data integration and regulatory inference with graph-linked embedding
…