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### Description of the bug
I know it is still work in progress, but the new version of this pipeline `https://github.com/nf-core/rnavar/tree/dev` seems really promising. However, it only takes the fi…
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We want to include genomics data in this workshop.
Pasting from #2 (@jorgepda )
I found this dataset from this [paper](http://science.sciencemag.org/content/347/6226/1138) and been running a co…
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Please process the following downloaded protein datasets for 2.6. The EBI and NCBI datasets include the new organism Arabidopsis.
/data/projects/glygen/downloads/genomics_england/current
/data/pro…
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### Description of feature
Make sure that no input are snapshot by nf-test:
As it will err if we change the path to the files:
- github: `/nf-core/test-datasets/modules/data/genomics/sarscov2/illum…
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**Description:**
Explore the implementation of a data visualisation layer to expand the functionality and usability of widgets. Below are the suggested widgets:
1. Target Cancer DepMap Widget.
2. Tar…
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I actually found out about Squash through the page at http://jdlm.info/articles/2017/05/01/compression-pareto-docker-gnuplot.html and realized that the genomics dataset that is used for those tests wo…
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Dear Dev,
I am new user of TRUST4 on single cell TCR seq analysis, regardless, TCR seq could be successfully obtained using bulk RNAseq data.
I wonder, with my 3' 10x genomics GEX data (I have b…
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Responsible: Tina V. @tinavisnovska
Date: Oct 17
Preview of the Data Carpentry Genomics lesson.
If you want to help with the workshop or be co-instructor, join us!
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We want multiple test datasets to implement and test the population genomics features. Otter will be one of them, as we can refer to a publication that studies the population structure. We need at lea…
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### Operating System
Other Linux (please specify below)
### Other Linux
Red Hat Enterprise Linux release 8.6
### Workflow Version
v.1.2.1
### Workflow Execution
Command line (Cluster)
### Othe…