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wf-somatic-variation
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add InDel calling for TO
#41
flokraft85
opened
1 month ago
0
Guidelines for running offline
#40
kedhammar
opened
1 month ago
0
VAF threshold in tumor only mode
#39
flokraft85
opened
1 month ago
0
bamstats error
#38
flokraft85
opened
1 month ago
2
why is `dna_r10.4.1_e8.2_400bps_hac@v4.3.0` not valid?
#37
istvankleijn
closed
2 months ago
3
merge BAM files from multiple wf-basecalling instances
#36
istvankleijn
closed
2 months ago
3
KeyError: 'mod' in workflow_glue/report_mod.py
#35
lucy924
opened
2 months ago
8
Erroneous detection of basecaller model
#34
sabackman
closed
2 months ago
4
mixed CRAM/BAM input
#33
istvankleijn
closed
3 months ago
2
Enable overriding basecaller model when multiple different basecallers are found in the BAM headers
#32
sabackman
closed
3 months ago
3
bamstats error with "implausible alignment information"
#31
lucy924
closed
2 months ago
6
Add chosen basecaller model into the main.nf error
#30
lucy924
closed
2 months ago
2
Error executing process > 'ingress_tumor:checkBamHeaders (1)'
#29
Manoswini-02
closed
4 months ago
1
Regression in annotate_sv: error caused by END<POS
#28
TBradley27
opened
5 months ago
5
Error executing process > 'mod:dss'
#27
SilviaMariaMacri
opened
5 months ago
12
Error executing process > 'ingress_normal:checkBamHeaders (1)'
#26
SilviaMariaMacri
closed
4 months ago
10
Problem with data containing reads basecalled with more than one basecaller model
#25
alexcoppe
closed
5 months ago
3
non-matched sample_name, tumour_bam and normal_bam from the html report
#24
selmapichot
closed
3 months ago
20
non-matched sample_name, tumour_bam and normal_bam from the html report
#23
selmapichot
closed
5 months ago
1
Error when emitting versions and parameters for main.nf
#22
TBradley27
closed
5 months ago
2
Cannot read project manifest -- Cause: Remote resource not found
#21
selmapichot
closed
6 months ago
1
SNP: low quality score filtering
#20
selmapichot
closed
7 months ago
1
error exit code 1
#19
selmapichot
closed
7 months ago
1
copy of the reference genome with the output files
#18
selmapichot
closed
7 months ago
4
Error in snv:clairs_predict_pileup_indel
#17
alexcoppe
closed
3 months ago
13
New HAC basecalling model data not compatible with the pipeline
#16
TBradley27
closed
5 months ago
12
Multiple inputs/design for mod
#15
umranyaman
closed
7 months ago
1
error trying to run on HPC
#14
Jane-Gibson
closed
6 months ago
2
Packages not found on Debian HPC
#13
umranyaman
closed
7 months ago
13
There are multiple input files for each of the following file names: OPTIONAL_FILE
#12
ChristopherRichie
closed
1 year ago
4
Are there any future plans for a CNV module?
#11
TBradley27
opened
1 year ago
1
aligned or unaligned bam files?
#10
nnneeennn
closed
1 year ago
4
Output files/folder structure
#9
myxotheles
closed
1 year ago
2
Error while running the wf
#8
assafgrw
closed
1 year ago
11
Default memory and time allocations for processes is too low
#7
TBradley27
closed
1 year ago
1
Can input be CRAM
#6
kiranpatil222
closed
1 year ago
1
Can this wf-somatic works on PacBio data ( Tumor/Normal BAM input)
#5
kiranpatil222
closed
1 year ago
1
non-human reference genomes
#4
ChristopherRichie
closed
1 year ago
4
[Bug]: Error executing process > 'alignment_stats:makeQCreport (1)
#3
myxotheles
closed
1 year ago
2
[Bug]: TypeError: 'NoneType' object is not subscriptable
#2
myxotheles
closed
1 year ago
4
The requested image's platform (linux/amd64) does not match the detected host platform (linux/arm64/v8) and no specific platform was requested
#1
myxotheles
closed
1 year ago
4