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I tried to run model 7/REV/GTR on the sample datasets: brown.nuc, brown.trees. The output file looks like this:
Distances: TN93 (kappa) (alpha set at 0.50)
This matrix is not used in later m.l. a…
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This setting seems to work well in terms of the names in nodes – the box stretches accordingly, up to the maximum. However, nodes do not appear to stretch with the contents of info boxes in nodes. Per…
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During my research I have encountered what might be a bug or perhaps a problem in the model description in AliSim. The problem arises when simulating sequences specifying a discretized gamma distribut…
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Date, time and location information has been sent to the TAG Chair email list.
Agenda
* Review / deep dive on the state of cloud native reports from TAGs (please reply to this issue with links to th…
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Why don't you update it's been a year it is the 20th of November pls update
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Hello,
I've encountered another issue while running the tool. I got the following error message:
> /usr/bin/bash: line 22: 46055 Aborted (core dumped) raxml-ng --redo --msa resul…
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When freshly installed on a server from source compilation, this error may be raised:
```bash
$ ipk.py build -b $RAXMLNG_BIN -r $WORKDIR/output_model.raxml.reduce.fasta -t $WORKDIR/output_model.r…
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Hello,
I have run into an issue with running `IQTREE v2.3.6` on linux HPC which was installed via Conda.
When I ran the command:
` $ iqtree -m GTR -s alignment.fasta -B 1000 -T AUTO --threads…
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```python
import cogent3
import pprint
aln = cogent3.load_aligned_seqs("https://github.com/user-attachments/files/17796702/example.phy.gz", format="phylip", moltype="dna")
phylo_gtr = cogent3.ge…