amkozlov raxml-ng issues

amkozlov / raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible

GNU Affero General Public License v3.0

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issues

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Assertion `tip_index == tip_count' failed

#202 domivika opened 3 days ago
6
The amino acid sequence contains U

#201 wang748 opened 3 weeks ago
1
constraint tree

#200 hjt1129 closed 19 hours ago
12
Hanging at Parsing MSA

#199 kevinmyers closed 4 weeks ago
5
FASTA file does not contain equal size sequences

#198 qkqk-hub closed 2 months ago
0
Effect of number of threads on raxml.bestModel

#197 yozeng closed 2 months ago
2
ERROR in SPR round (LIBPLL-3584): Constraint check failed after SPR round!

#196 jedgold closed 2 months ago
2
how to estimate the `#categories:`

#195 liamxg closed 2 months ago
1
Confused command line

#194 liamxg closed 2 months ago
2
which parameters should I use with the "lot of missing data"?

#193 liamxg closed 3 months ago
1
Is this normal of this blank line?

#192 liamxg closed 3 months ago
2
install error

#191 liamxg closed 2 months ago
4
error

#190 liamxg opened 3 months ago
3
Excluding sites

#189 fluttercork opened 3 months ago
2
how many functions are not find in `raxml-ng -h`?

#188 liamxg closed 3 months ago
2
ancestral state reconstruction

#187 liamxg opened 3 months ago
0
+B gets added to model description

#186 wpfeiffer closed 4 months ago
2
Raxml-ng behavior regarding alignment sites

#185 aghozlane closed 5 months ago
1
Duplications don't cluster after ancestral tree reconstruction

#184 ceren-yildirim closed 6 months ago
5
BL opt converged to a worse likelihood score

#183 fluttercork opened 6 months ago
10
Substitution rates

#182 liamxg closed 6 months ago
3
Making tree from large dataset

#181 kevinmyers closed 5 months ago
8
Add raxml-ng in apt

#180 aghozlane opened 7 months ago
0
Too many samples on a long branch in a rooted tree containing three outgroup tips

#179 QianGuoPKU closed 9 months ago
1
why the number is from #2 to #1?

#178 BEAST-Community closed 9 months ago
2
Binary data input format

#177 maggiesudo closed 9 months ago
6
What is the different between G4 and G4m, thanks.

#176 liamxg closed 9 months ago
1
tbe values when using a constraint tree

#175 padpadpadpad closed 6 months ago
1
which software and parameters should I use to construct a good ml tree?

#174 liamxg closed 9 months ago
1
masked missing positions

#173 TCHeaven closed 6 months ago
1
can raxml-ng handle 6 million genomes of SARS-CoV-2?

#172 liamxg closed 10 months ago
4
Adaptive RAxML-NG v1.0 + libpll2 -> coraxlib

#171 togkousa closed 10 months ago
0
libc++abi: terminating with uncaught exception of type std::runtime_error: ERROR in SPR round (LIBPLL-3584): Constraint check failed after SPR round!

#170 rvosa closed 6 months ago
8
Broken link for Mac M1 binary

#169 ChrisHIV closed 11 months ago
1
Bus Error on Apple M1 Ultra Using RAxML-NG v. 1.2.0

#168 hushuzuiniu closed 2 months ago
4
very very large dataset recomendations

#167 sapuizait opened 11 months ago
2
BalancerStat Assertion failed?

#166 danieljrichard opened 1 year ago
1
Allow for 3 taxon trees to be evaluated

#165 computations closed 1 year ago
2
What libpll code is really needed

#164 tillea opened 1 year ago
3
how to set the random start tree?

#163 liamxg closed 2 months ago
1
all branch lengths always `0.000001` with CATG file

#162 dlaehnemann closed 1 year ago
4
Error: assertion failed

#161 greektash opened 1 year ago
9
`ERROR: vector::_M_default_append` when running on CATG file

#160 dlaehnemann closed 1 year ago
9
catg files/core dumped

#159 gerhardJaeger closed 1 year ago
10
`raxml-ng --parse` does not produce `.rba` file for a `.catg` file as `--msa` input in version 1.1.0

#158 dlaehnemann closed 1 year ago
4
Add SPR round optimization by @togkousa

#157 amkozlov closed 1 year ago
0
When I run raxml-ng v1.1, it stay in the stage of Starting ML tree search with 20 distinct starting trees for a longnight

#156 Dkaaaaa opened 1 year ago
1
Add bootstrap values to phylogenetic tree

#155 asierFernandezP closed 1 year ago
2
PARTITION FILE format - Error

#154 vcastroagudin closed 1 year ago
1
Taxon names with invalid characters

#153 AndreaAguadoM closed 1 year ago
2