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The eLwazi Data Jamboree is happening from 26th August - 30th August. There are two parts Wei is helping to prep - FAIRification and Data Harmonisation. This ticket is for Data Harmonisation.
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These components make sure that data is interoperable, i.e. provided to agreed upon formats, structures and semantics. They are used to ingest data and transform it to common standard data, e.g. in th…
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Some ideas for the visualisation of the brain age predictions and harmonization results:
Brain Age predictions:
- Chronological age vs brain age prediction per dataset (value in the plot on y-axis…
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I've applied the commands below to obtain mr_ivw effect estimates, taking into account correlation between SNPs.
MRObject
MaVdb updated
4 months ago
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@vaitkus and I were musing over the wide variation in names and references to the various dictionaries, and note the following scatter of designators (G means version on GitHub (sometimes corresponds …
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As a **community user** I want **to be able to understand how the Gentropy ariflow pipeline works ** because **I want to reproduce it with nextlfow.**
## Background
Background to this task is a…
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As part of the eLwazi Jamboree, Wei has responsibilities for prepping for the FAIRification and Data Harmonisation parts of the day. This ticket is about FAIRification.
We aim to have a worked examp…
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Il est important d'harmoniser l'orthographe des mots ci-dessous:
- [ ] ``Block``
*Liste susceptible de changer*
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This issue was raised by a user query.
Some studies in this publication have harmonised files, e.g.
http://ftp.ebi.ac.uk/pub/databases/gwas/summary_statistics/GCST90200001-GCST90201000/GCST90200266/
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We need to save log files for METAL
## Processing file 'Phase2_SCZ_16_900.gz'
## WARNING: Bad alleles for marker 'chr10:3315237:INDEL_cg25898111', expecting 'd/i' found 'ac/gc'
## WARNING: Bad a…