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Histology
- Histology type
- Immunohistochemistry or immunofluorescence
- In paraffin or frozen
- Brain was sliced or not
- Thickness
- Parts of the brain (whole vs half)
- What protocol …
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![{AC1C7C82-20B7-4A7F-AE3F-C3CC317EFDF0}](https://github.com/user-attachments/assets/655e48ee-2747-4159-86ec-5e90c0e34561)
how to get histology in SPATA2?
I run it but only get NULL> getSpatSegmVarN…
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@anhtuduong I just create histology data folder in my repository. There are histology data of the first 300 cases.
I also extract useful information`tumor_histologic_subtype` to a text file name:`tum…
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Hello,
I have the probe track obtained from AJ Peters pipeline (https://github.com/petersaj/AP_histology), which gives the structure called probe_ccf as its output. Instead of using the last step of …
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Dear developers,
Thank you for creating the amazing tool, cell2location. It has been incredibly helpful in my research. According to the documentation, the N_cells_per_location parameter can be est…
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Hello, I'm relatively new to sorting data, and I'm currently working on creating probes for analyzing my data. The records consist of four groups of four single electrodes (not tetrodes). Their positi…
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I have a few 10xVisium tissue section and associated spatial transcriptomics data. The spaceranger process has been done correctly judging based on the fiducials of the images which has been aligned t…
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Hi Jian,
First of all, thanks for the awesome tool! I (along with @symoon) been investigating using SpaGCN for one of our projects. We're successfully able to reproduce the results from the tutoria…
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Hey!
I'm interested in registering some histology images and I was wondering if Elastix could be used for this purpose. I tried to register some demo images, which were cropped from the same tissue…
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Our wiki last year had histology data at http://www.neuro.polymtl.ca/histology.php and http://www.neuro.polymtl.ca/histology_sem.php. We need to re-home it and update the wiki links to it ( https://gi…
kousu updated
2 years ago