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The ImageJ2 gateway is a Java-based API that provides a bridge between ImageJ and other image processing libraries and frameworks. The ImageJ2 gateway allows developers to use ImageJ as a front-end f…
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A long-term wish from some users was to craft a jar file that is independent from ImageJ and/or ImageJ2. We should implement this later but have it in mind from the very beginning. I _think_ this coul…
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![image](https://github.com/Max-ChenFei/VPE_IP/assets/8528052/f2e0a6d1-83e9-4ff9-a4d3-8c7b2ca5b72d)
https://nbviewer.org/github/guiwitz/neubias_academy_biapy/blob/master/14-PyImageJ.ipynb
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This makes the tools much more flexible and allows integration with KNIME and CellProfiler. It would also be worthwhile to integrate with bioformats
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The [Downloads page](http://imagej.net/Downloads) currently has two major download sections:
- A build of ImageJ2 from the [master branch](https://github.com/imagej/imagej/tree/master).
- Bundles of F…
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It seems planemo is uploading unwanted files to the Tool Shed with individual tool uploads. In some cases it uploads multiple tools from a demultiplexed git repository into a single tool repository, …
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This artifact (`net.imagej:imagej`) should be renamed to `net.imagej:imagej2` for clarity.
* All downstream code depending on `net.imagej:imagej` (e.g. `example-imagej-command` which should be rena…
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- The overall API calling of PyImageJ is similar to ImageJ API calling in headless mode
```
# Create an ImageJ2 gateway with the newest available version of ImageJ2.
import imagej
ij = imagej.in…
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- We have example plugin project for ImageJ 1.x plugin: https://github.com/imagej/example-legacy-plugin
- We have example command project for ImageJ2 plugin: https://github.com/imagej/example-imagej…
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- it's quite hard to find a plugin in the Fiji software and where's the plugins from
- I used to search in the java package of
- ImageJ2
- https://javadoc.scijava.org/ImageJ2/net/imagej/ops/Ops…