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I recently ran the pipeline with a transcription factor as the input protein (Q96QS3). Looking at the results, there are not really any high quality hits. Most have TMscores
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I wish to utilize the amber99sb-disp force field in OpenMM, which is proficient in describing Intrinsically Disordered Proteins (IDPs). I intend to combine it with OpenMM's metadynamics to accelerate …
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This (along with Node & Platform) are requested information in various Node SDP process, but only Node and Platform are supported by biotoolsSchema hence bio.tools.
Issue is to add enum for ELIXIR …
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Hello,
Thanks for creating this software. We're interest in generating conformers from a directory of folded proteins. How can we do this?
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Hello, I am having trouble executing the example in the [Generating intrinsically disordered regions](https://github.com/microsoft/evodiff?tab=readme-ov-file#generating-intrinsically-disordered-region…
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I saw the article "Protocols for Multi-Scale Molecular Dynamics Simulations in Amber and Gromacs: a Case Study of Intrinsically Disordered Amyloid Beta" from biorxiv. I want to use your method to repr…
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spotlight still atttached to old session
https://ftp.pombase.org/reference/PMID:34279633
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Pro1 has a "disordered region" feature of 2 amino acids. This seems odd to me. I'm not sure you can call disordered for 2 amino acids.
What is the source of this (I think they come from InterPRot, bu…
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Over the years there have been various uses of Schema.org beyond its original founding "mark up the structure implicit in ordinary web pages" approach. It is time to explore and document some other ap…
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Despite being told that this wasn't important or possible to add forwarding information for deleted identifiers when reported it, PubMed now addresses this issue by providing forwarding links. This is…