issues
search
microsoft
/
evodiff
Generation of protein sequences and evolutionary alignments via discrete diffusion models
MIT License
526
stars
73
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
oadm? oaar?
#58
Ryosuke-254
opened
6 days ago
0
fine-tuning
#57
Ryosuke-254
opened
1 week ago
0
Conditional Sequence Generation example command throwing an error
#56
JDaksh
opened
1 week ago
0
How can I fine-tune the models with my sequences or MSAs?
#55
JiangLab2020
opened
4 weeks ago
0
Increasing sequence similarity to input sequences
#54
diossynvax
opened
4 weeks ago
0
Update Dockerfile to use v1.1.0 release and install deps from requirements.txt
#53
colbyford
opened
1 month ago
0
Generate_msa --start-query for custom file
#52
rostro36
opened
1 month ago
1
Biotite v1.0.0 breaks conditional diffusion functions.
#51
colbyford
closed
1 month ago
1
The python version does not correspond to the version of the package required in evodiff
#50
YusenZheng
closed
1 month ago
2
Using a novel config file in EvoDiff-MSA
#49
diossynvax
closed
2 months ago
2
Question about generating IDRs from EvoDiff-Seq
#48
zhang-bo-lilly
opened
2 months ago
3
conditional_generation inpaint import error
#47
ranaabarghout
closed
1 month ago
2
Question not Issue
#46
marjanUofT
opened
2 months ago
2
Two minor syntax error bugfixes
#45
gooley
closed
2 months ago
0
Remove unused mlflow dependency
#44
gooley
closed
3 months ago
0
UserWarning: Attempted to get default timeout for nccl backend, but NCCL support is not compiled
#43
maggiedev2024
opened
3 months ago
0
Dependency issues when installing environment packages
#42
gadmiraal
closed
3 months ago
0
Add IDR index data
#41
sarahalamdari
closed
3 months ago
3
remove esm dependencies from conditional generation
#40
sarahalamdari
closed
3 months ago
0
Scaffolding benchmark produces different sequences every time it is run
#39
abhi-senthilkumar
closed
3 months ago
1
Error while running inpainting task using EvoDiff-seq
#38
aksingh135
closed
3 months ago
1
Non-canonical amino acid sequence seen
#37
sungyounjoo
opened
6 months ago
1
Nothing works
#36
ChenchaoZhao
closed
3 months ago
4
Following basic code doesn't work
#35
dannyoo
closed
8 months ago
1
How to train LRAR
#34
violet-sto
closed
8 months ago
0
Question: ways to improve conditional MSA generation
#33
yzhang-github-pub
closed
3 months ago
1
padding_idx=masking_idx in ByteNetLMTime instantiation arguments
#32
cmarkak
closed
7 months ago
1
msa_oa_ar_maxsub not recognized
#31
jasonkyuyim
opened
11 months ago
2
Running the `evodiff/generate.py` script
#30
Amelie-Schreiber
closed
3 months ago
1
the error in generate sequences using esm1b_650M
#29
Linzy19
closed
11 months ago
2
Question on MaxHamming distance
#28
BSharmi
closed
11 months ago
1
Error with IDR inpainting with Evodiff-MSA
#27
ZhiYeG
closed
3 months ago
1
Fix LRAR model loading
#26
sarahalamdari
closed
3 months ago
0
Error Loading State Dictionary in ByteNetLMTime: Unexpected Keys
#25
PodevynLoris
closed
1 year ago
6
Fix bug in trrmsa dataset
#24
JonathanDZiegler
closed
1 year ago
0
Indexing bugs in TRRMSADataset
#23
JonathanDZiegler
closed
1 year ago
0
Allow diffusion to gap character in OADM models?
#22
elibixby
closed
1 year ago
1
Error Loading Pretrained Model with `--pretrained` Flag
#21
PodevynLoris
closed
1 year ago
0
A Dockerfile to run EvoDiff locally in a container (with GPU support)
#20
colbyford
closed
3 months ago
1
Using generate_msa()
#19
mcale6
closed
1 year ago
3
Question about fine-tuning
#18
PodevynLoris
closed
1 year ago
1
KeyError: '!' during conditional generation
#17
cmwilson252
closed
3 months ago
5
fix minor typos
#16
guillaumehu
closed
1 year ago
0
cleanup train imports
#15
sarahalamdari
closed
1 year ago
0
Inpaint VS Scaffold
#14
PodevynLoris
closed
1 year ago
1
Add test data to data/
#13
sarahalamdari
closed
1 year ago
0
Missing uniref50_aa_ref_test.csv
#12
andrew0901
closed
1 year ago
2
TypeError: forward() missing 1 required positional argument: 'y'
#11
jsteward2930
closed
6 months ago
2
Missing data files: lengths_and_offsets.npz, consensus.fasta, and splits.json
#10
Linzy19
closed
1 year ago
3
tag device='cuda' not working
#9
arjunsbalaji
closed
3 months ago
4
Next