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I've written a simple implementation of the Kamada Kawai layout using Optim. Is there interest in a general inclusion? If so, I'll clean it up and put in a pull-request.
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I have a graph with a tree structure. Only Kamada Kawai reveals the rooted structure, but something seems to be preventing the nodes from connecting. In essence, the xend and yend properties are not b…
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### What is the expected enhancement?
Right now retworkx has several layout methods available: https://qiskit.org/documentation/retworkx/api.html#layout-functions
but there are some other co…
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I have some code to analyze a dataset that I used in 2016 and that produced great results..
genes
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**Bug category**
- [x ] *bug - compilation error*
- [ ] *bug - compilation warning*
- [ ] *bug - runtime error*
- [ ] *bug - runtime warning*
- [ ] *bug - logic error*
**Describe the bug**
…
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Hi,
I am trying to use plot_module() to create module subnetwork plots, but when I run the code, I receive an error that I have not been able to fix.
pnet.obj.9
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We're currently not using the properties `element_name` and `element_color`. Is there a future use case for those?
_Originally posted by @JanCBrammer in https://github.com/TUCAN-nest/TUCAN/…
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There are some hacks in the code now that circumvent this error by adding in a RandomLocationTransformer, but I think that the implementation of KKLayoutAlgorithm should be robust enough to work no ma…
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Hello,
It seems that the function to plot the GRN on python doesn't work anymore since the recent updates:
from scenicplus.networks import create_nx_tables, create_nx_graph, plot_networkx, expor…
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@Shimizu07190 @tanakaht @kabe7 総合演習実験で困ったことがでてきたら,ここに書いて下さい.
ディレクトリの構成ですが,この symdoc リポジトリは元々は一年前の論文(第一週に渡したもの)のシステムの例題集です.古い例題になりますが以下の例は演習をやる参考になるでしょう.
- 平方根
- Kamada-Kawai 法
第二週に紹介した t3d.p…