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YuLab-SMU
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ReactomePA
Reactome Pathway Analysis
https://yulab-smu.top/biomedical-knowledge-mining-book/
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gsePathway giving "Error in check_gene_id(geneList, geneSets)"
#43
pschumann4
closed
2 weeks ago
2
update CITATION
#42
Clearmind777
closed
8 months ago
0
can Arabidopsis run this function?
#41
LongYuan0529
opened
11 months ago
0
P-value correction for multiple testing necessary?
#40
L3ft2di3
opened
1 year ago
0
Support passing a GSON object to `enrichPathway(organism)` and `gsePathway(organism)`
#39
huerqiang
closed
2 years ago
3
ReactomePA plot label text overlap
#38
Jay-Leung
opened
2 years ago
0
Support non decreasing sorts in reactome pathway analysis
#37
Nelson-Gon
opened
2 years ago
0
Avoid using assign in setting ReactomePA's environment variable
#36
Nelson-Gon
closed
2 years ago
2
Specify minimal package versions in the Description file
#35
Nelson-Gon
opened
2 years ago
2
Remove deprecated calls to guide=FALSE
#34
Nelson-Gon
closed
2 years ago
0
Difference between Kobas-i, Reactome website and ReactomePA (may caused by duplicated background genes)
#33
Freya-Cui-2020
opened
2 years ago
0
No gene can be mapped with gsePathway
#32
alexandrafleming
closed
2 weeks ago
2
fix startup link
#31
aljabadi
closed
3 years ago
1
WES data
#30
IvanaOsredek
opened
3 years ago
0
organism avaialble?
#29
camilla0801
opened
3 years ago
0
support for plants?
#28
Polligator
closed
2 years ago
1
NO plot output + enrichPathway error
#27
camilla0801
closed
2 years ago
1
enrichPathway
#26
ale07alvarez
opened
4 years ago
0
update for fgsea
#25
huerqiang
closed
4 years ago
0
"No gene can be mapped" when running enrichPathway
#24
RuiyangLiu94
opened
4 years ago
4
one gene kills the pathway
#23
under-score
closed
2 years ago
2
Working with more than one gene list
#22
kasumaz
closed
2 years ago
1
Cannot extract results from enrichPathway
#21
ibichind
opened
5 years ago
4
install issue
#20
xiaowenchenjax
closed
5 years ago
1
Cannot change cnetplot edge thickness and color
#19
wasimaftab
opened
6 years ago
2
gnutls_handshake() failed: Handshake failed
#18
laixn
closed
6 years ago
3
No gene can be mapped, return NULL
#17
ulapei
closed
6 years ago
2
gene symbols not being seen with viewPathway calls using openCPU+apache+R3.5+ubuntu18.04
#16
viswam78
closed
6 years ago
3
fold change color palette on viewPathway is inconsistent
#15
viswam78
closed
6 years ago
1
No overrepresented genes (but I see significant p-values)
#14
fcamus
closed
6 years ago
1
Unable to produce graphics with enrichMap()
#13
tiroshamit
opened
6 years ago
0
enrichPathway make readable does not work for yeast genome
#12
snystrom
opened
7 years ago
7
problems with visualizing results
#11
guidohooiveld
closed
7 years ago
5
Input structure of Gene Set Enrichment Analysis
#10
sajjad6al
opened
7 years ago
6
very different results with upgrade of R
#9
psudmant
closed
7 years ago
1
No results returned
#8
ibichind
closed
8 years ago
4
bump version
#7
LiNk-NY
closed
8 years ago
1
Exporting getDb
#6
LiNk-NY
closed
8 years ago
10
feature request: Mapping of Metabolites
#5
topialla
closed
7 years ago
1
Error in ReactomePA
#4
dfv
closed
8 years ago
3
installation from Github
#3
YulongNiu
closed
8 years ago
3
reference to ellipsis pars
#2
vladpetyuk
closed
9 years ago
0
enabling other organisms
#1
vladpetyuk
closed
9 years ago
1