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I am currently working on a cell-cell communication analysis using NicheNet and have encountered a persistent error when attempting to use the get_ligand_signaling_path function. Despite following the…
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Hi, I am currently running Liana and it is working just fine. The problem I am encountering is that the source, target, ligand/receptor complex are completely changed to numeric identifiers. Sorry if …
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Thanks for this great package!
I would like to make a ligand-receptor-target circos plot as described in the "circos" vignette and as seen in "B":
 but @tdudgeon says that the CIF parsing in the collator and ali…
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Hi,
in the documentation ( https://ringtail.readthedocs.io/en/stable/index.html )
in the **command line interface section** there is the following statement:
_"Be cautious when adding results from …
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A common feature request is to ask which targets a given ligand can bind to. This might be convenient if a given group has a molecule on hand and wants to see what they could do with it.
This would…
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Hi, Congrats your with an impressive work. Boltz1 is Huge.
I'd like to ask you about writing covalent bond with ligand and residue.
Here is my yaml file
version: 1 # Optional, defaults to …
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Hey, first of all, thanks a lot for this great package!
However, I had some issues following your Bivariate Ligand-Receptor Relationships tutorial. When running the following code from your tutori…
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I am trying to run this code for a mouse dataset (https://ccc-protocols.readthedocs.io/en/latest/notebooks/ccc_R/QuickStart.html):
```
# Generate list with ligand-receptors pairs in DB
lr_pairs %…