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## Summary
Instead of FAST, use SynthSeg segmentations for 5TT/GMWMI generation
## Additional details
FAST isn't great, and we already have SynthSeg outputs from QSIPrep
## Next steps
Her…
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Hello.
Axial map cannot be exported as a .mif file in depthmapX8.0.
A message like the following will be displayed.
"Sorry, unable to open file for export."
"Sorry, unable to open associated.m…
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Currently, in order to achieve conversion between MRtrix and BEP016, I would need to be able to invoke MRtrix's `mrconvert` command. This may result in an implementation that deviates quite a bit from…
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Instead of typing tcl syntax as strings in Python, we could use templates. This way we simplify the code.
More details: https://github.com/ubermag/discretisedfield/pull/105#issuecomment-947426739
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Hi @tdv,
Would you mind to add (or consent that we add) [mif](https://github.com/tdv/mif) in `here` ?
This project compare performance based on 3 routes :
+ `GET` `/`, **SHOULD** return a suc…
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Redirecting discussion from #8.
> ```bash
> "dwibiascorrect: [ERROR] N4BiasFieldCorrection -d 3 -i mean_bzero.nii -w mask.nii -o [corrected.nii,init_bias.nii] -s 4 -b [100,3] -c [1000,0.0] (ants.p…
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Hey there!
Thanks for the useful tool!
I was wondering, do you have any plans to implement support for multi channel fluorescence images (mIF)?
I tested registering an H&E slide with DAPI ( w…
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Hi there, I am trying to use this software for removal of a consistent stripe artefact in all b0 and DWI's .
The code I ran was: docker run --rm --volume /data/bmol239/Analysis/trouble-shooting:/d…
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Traceback (most recent call last):
File "mifs.py", line 19, in
class MutualInformationFeatureSelector(object):
File "mifs.py", line 86, in MutualInformationFeatureSelector
import mifs…
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My data consist of b=0 and b= 1000 with 55 gradient directions. I ran my line of code for ss3t_csd_beta1 as:
> ss3t_csd_beta1 preproc_unbiased.mif wm.txt wmfod.mif gm.txt gmfod.mif csf.txt csffod…