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**Is your feature request related to a problem? Please describe.**
Classes that subclass AnnData can also profit from the internal organization from MuData.
**Describe the solution you'd like**
One c…
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**Describe the bug**
Running into an import error, seems like its limited to Python 3.9. Python 3.9 EOL is 2025. Is there a reason why the package only supports 3.10 and above. Atleast thats my under…
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I created my own chromsize.tsv:
it looks like
Chromosome Start End
0 chr1 0 248956422
1 chr2 0 242193529
2 chr3 0 198295559
3 chr4 0 19…
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I'm working with a scCRISPR dataset from another group, I can open it with muon but not with MuData (1.8.0). Some details below. Thanks for taking a look!
```
wget -O inference_mudata.h5mu "https:…
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First, I think documentation could be improved for such a basic function, second, I think it should take similar arguments to `anndata.read`.
MUCDK updated
1 month ago
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Hello,
Thanks for developing this package. I have been following the Liana+ tutorial, and came across an import error after installing liana package. The python version is 3.9.
#import liana
im…
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https://mudata.readthedocs.io/en/latest/
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Hello-
We're publishing some data as MuData in the HuBMAP consortium, and we're also planning to use it to store descriptions and annotations of objects in segmentation masks.
These descriptions…
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This is the current implementation of writing metadata in JSON format for ingest into HuBMAP infrastructure:
```python
def extract_metadata_write_json(mdata: mudata.MuData, output_json: Path):
…
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The current definition for sofa.models.SOFA.SOFA.__init__does not include either the parameter guide_scale nor the parameter target scale. The first one is present in the currently publicly available …