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Hi! I was looking to apply diffsig within my project and was just wondering if you could clarify the interpretation of the intercept given that it captures the baseline presence of the mutational sign…
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The current mutational signature implementation uses continuous data. It would be very useful if we can turn the data into binary calls (present or not or NA). We can then select samples with certain …
jjgao updated
9 months ago
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- Put barchart in the top of the tooltip
- Significant Mutational Signatures -> Mutational Signatures? Or just list significant ones?
inodb updated
9 months ago
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We should have a pipeline to calculate mutational signatures for any MAF.
jjgao updated
3 years ago
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Hi.
Tried to use the package for _de novo_ extraction of mutational signatures.
Got an error
> RemoteTraceback Traceback (most recent call last)
> RemoteTraceback: …
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- Mutational signatures pipeline https://github.com/cBioPortal/cbioportal/issues/6779
- Mutational Signatures in Comparison page
- Mutational Signatures in Study view
- Discrete mutational signatur…
jjgao updated
9 months ago
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Shalabh will provide the current list of MS and also the threshold values
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Issue by @MaxUlysse, moved from SciLifeLab#666
- [ ] [ExpansionHunter](https://github.com/Illumina/ExpansionHunter) for estimating repeat sizes
- [ ] [QDNAseq](https://github.com/ccagc/QDNAseq) CN…
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Hello,
Thank you for a very useful package!
I would like to use your code to run HDP mutational signatures on custom catalog categories (for example I just want to use 10 categories instead of …
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@jjgao commented on [Fri Dec 22 2017](https://github.com/cBioPortal/GSoC/issues/40)
**Background**:
Signatures of mutational processes in human cancers can be inferred from somatic mutations data…
jjgao updated
4 years ago