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Dear Till,
I hope you are well and that I am not bothering you too much. I am working on DNA metabarcoding of the stomach contents of Atlantic bluefin tuna by amplifying partial fragments of the COI …
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Thanks for your ongoing work on this tool! Hitting an odd issue:
```bash
docker run --rm -it -v $(pwd):$(pwd) -w $(pwd) quay.io/biocontainers/ncbi-amrfinderplus:4.0.3--h283d18e_0
mkdir db_down…
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Hi All,
I am a new mac user and have been slowly setting up the new laptop. I freshly installed cblaster and am running into some problems (see below). I think it could be a python issue. I w…
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### Checklist
- [X] I added a descriptive title.
- [X] I searched through [existing issues](https://github.com/ContinuumIO/anaconda-issues/issues) and couldn't find a solution or duplicate issue.
- […
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The GitHub page [here](https://github.com/sanger-tol/ascc/blob/ea10_documentation_edits2/docs/databases.md) states "Download the nr database protein FASTA files from the NCBI ftp server (wget ftp://ft…
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## Expected Behavior
`mmseqs download` would be expected to download an up-to-date version of the target 'nr' and 'nt' databases.
## Current Behavior
The download FASTA targets for the 'nr' and '…
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I keep getting errors when using makeblastdb. According to other reported issues, I was using Blast 2.14.0 and the current iteration of Blast, but neither had any impact.
Script used:
library(p…
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Hi,
ncbi-blast+ has been recently upgraded to version 2.16.0 in Debian sid, and from my current analysis, this seems to have triggered [Debian bug #1077454]. Relevant part of the error looks like:…
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Hi William,
Thanks for that demo of Sage Cloud last week in Lewis- Really amazing stuff.
If possible, it would be great to get NCBI Blast loaded. I am going to try to use it for teaching this summer (…
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> Maximum number of hits to keep for each query.
>BLAST will choose the first N hits in the reference
database that exceed perc-identity similarity to
query. NOTE: the database is not sorted by
si…